Gm4879 Pseudogene Detail

Summary

• Symbol
  Gm4879
• Name
  predicted pseudogene 4879

• Feature Type
  pseudogene
• IDs
  MGI:3648111
  NCBI Gene: 232887
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:12912830-12914101 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 7.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648111	pseudogene	Chr7:12912744-12914127 (+)
129S1/SvImJ	ENSMUSG00200041563	pseudogene	Chr7:6954022-6955293 (+)
A/J	ENSMUSG00195053527	pseudogene	Chr7:6638734-6640005 (+)
AKR/J	ENSMUSG00220030187	pseudogene	Chr7:6121191-6122462 (+)
BALB/cJ	ENSMUSG00180051581	pseudogene	Chr7:6561679-6562950 (+)
C3H/HeJ	ENSMUSG00175049253	pseudogene	Chr7:7007388-7008659 (+)
C57BL/6NJ	ENSMUSG00215044123	pseudogene	Chr7:7235109-7236380 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029832	pseudogene	Chr7:6719176-6720447 (+)
CBA/J	ENSMUSG00210047782	pseudogene	Chr7:6277123-6278394 (+)
DBA/2J	ENSMUSG00185045623	pseudogene	Chr7:9809784-9811055 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000053563	pseudogene	Chr7:9465904-9467209 (+)
LP/J	ENSMUSG00230046835	pseudogene	Chr7:13992286-13993557 (+)
NOD/ShiLtJ	ENSMUSG00190051937	pseudogene	Chr7:10900328-10901599 (+)
NZO/HlLtJ	ENSMUSG00225054432	pseudogene	Chr7:11470921-11472192 (+)
PWK/PhJ	ENSLUMG00010050876	pseudogene	Chr7:10622358-10623663 (+)
SPRET/EiJ	ENSMSPG00010049446	pseudogene	Chr7:6782285-6783556 (+)
WSB/EiJ	ENSIUOG00005053684	pseudogene	Chr7:18268104-18269375 (-)

Homology

• Gene Tree
  Gm4879
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000048261 (Evidence)
• NCBI Gene
  232887

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048261	Ensembl Gene Model | MGI Sequence Detail	1272	C57BL/6J
transcript	ENSMUST00000122190	Ensembl | MGI Sequence Detail	1272	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582