Gm5221 Pseudogene Detail

Summary

• Symbol
  Gm5221
• Name
  predicted gene 5221

• Feature Type
  pseudogene
• IDs
  MGI:3648101
  NCBI Gene: 383186
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:65590257-65591223 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 37.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648101	pseudogene	Chr16:65590118-65591312 (+)
129S1/SvImJ	ENSMUSG00200008490	pseudogene	Chr16:62493433-62494399 (+)
A/J	ENSMUSG00195001601	pseudogene	Chr16:62205737-62206703 (+)
AKR/J	ENSMUSG00220005655	pseudogene	Chr16:62485590-62486556 (+)
BALB/cJ	ENSMUSG00180001735	pseudogene	Chr16:62334967-62335933 (+)
C3H/HeJ	ENSMUSG00175004548	pseudogene	Chr16:62617433-62618399 (+)
C57BL/6NJ	ENSMUSG00215014312	pseudogene	Chr16:62429432-62430398 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012650	pseudogene	Chr16:62480659-62481623 (+)
CBA/J	ENSMUSG00210015173	pseudogene	Chr16:62566693-62567659 (+)
DBA/2J	ENSMUSG00185004678	pseudogene	Chr16:62512472-62513438 (+)
FVB/NJ	ENSMUSG00205012235	pseudogene	Chr16:62307399-62308365 (+)
JF1/MsJ	ENSUMUG00000015431	pseudogene	Chr16:62678799-62679759 (+)
LP/J	ENSMUSG00230007805	pseudogene	Chr16:65069071-65070037 (+)
NOD/ShiLtJ	ENSMUSG00190016535	pseudogene	Chr16:62563494-62564460 (+)
NZO/HlLtJ	ENSMUSG00225036211	pseudogene	Chr16:68304592-68305558 (+)
PWK/PhJ	ENSLUMG00010011885	pseudogene	Chr16:62327847-62328807 (+)
SPRET/EiJ	ENSMSPG00010002092	pseudogene	Chr16:63064497-63065451 (+)
WSB/EiJ	ENSIUOG00005002364	pseudogene	Chr16:62597032-62597998 (+)

Homology

• Gene Tree
  Gm5221
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm5221
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116622 (Evidence)
• NCBI Gene
  383186

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116622	Ensembl Gene Model | MGI Sequence Detail	967	C57BL/6J
transcript	ENSMUST00000231905	Ensembl | MGI Sequence Detail	967	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76