Gm6450 Pseudogene Detail

Summary

• Symbol
  Gm6450
• Name
  predicted gene 6450

• Feature Type
  pseudogene
• IDs
  MGI:3648082
  NCBI Gene: 623798
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:93151690-93152263 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648082	pseudogene	Chr5:93151650-93152364 (+)
129S1/SvImJ	ENSMUSG00200010030	pseudogene	Chr5:88887581-88888154 (+)
A/J	ENSMUSG00195026259	pseudogene	Chr5:88070689-88071262 (+)
AKR/J	ENSMUSG00220012288	pseudogene	Chr5:88212573-88213146 (+)
BALB/cJ	ENSMUSG00180026381	pseudogene	Chr5:87907009-87907582 (+)
C3H/HeJ	ENSMUSG00175044283	pseudogene	Chr5:90007727-90008300 (+)
C57BL/6NJ	ENSMUSG00215031402	pseudogene	Chr5:88753724-88754297 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039327	pseudogene	Chr5:87609234-87609807 (+)
CBA/J	ENSMUSG00210006904	pseudogene	Chr5:88786498-88787071 (+)
DBA/2J	ENSMUSG00185041531	pseudogene	Chr5:90719343-90719916 (+)
FVB/NJ	ENSMUSG00205030580	pseudogene	Chr5:87611953-87612526 (+)
JF1/MsJ	ENSUMUG00000047650	pseudogene	Chr5:94952851-94953424 (+)
LP/J	ENSMUSG00230028930	pseudogene	Chr5:95398720-95399293 (+)
NOD/ShiLtJ	ENSMUSG00190038461	pseudogene	Chr5:87688872-87689445 (+)
NZO/HlLtJ	ENSMUSG00225010332	pseudogene	Chr5:100556303-100556876 (+)
PWK/PhJ	ENSLUMG00010031223	pseudogene	Chr5:87630555-87631128 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005029905	pseudogene	Chr5:90664529-90665105 (+)

Homology

• Gene Tree
  Gm6450
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm6450
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000106930 (Evidence)
• NCBI Gene
  623798

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106930	Ensembl Gene Model | MGI Sequence Detail	574	C57BL/6J
transcript	ENSMUST00000200896	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm6450:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47350	Chr5:93151654-93151669 (+)	-28 bp