Gm9088 Pseudogene Detail

Summary

• Symbol
  Gm9088
• Name
  predicted gene 9088

• Feature Type
  pseudogene
• IDs
  MGI:3648064
  NCBI Gene: 668289
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:3981533-3982040 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 1.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648064	pseudogene	Chr12:3981322-3982054 (-)
129S1/SvImJ	ENSMUSG00200024369	pseudogene	Chr12:934900-935407 (-)
A/J	ENSMUSG00195016292	pseudogene	Chr12:962596-963103 (-)
AKR/J	ENSMUSG00220030999	pseudogene	Chr12:960145-960652 (-)
BALB/cJ	ENSMUSG00180015711	pseudogene	Chr12:959078-959585 (-)
C3H/HeJ	ENSMUSG00175009633	pseudogene	Chr12:941838-942345 (-)
C57BL/6NJ	ENSMUSG00215019433	pseudogene	Chr12:889731-890238 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022982	pseudogene	Chr12:758885-759392 (-)
CBA/J	ENSMUSG00210013793	pseudogene	Chr12:961575-962082 (-)
DBA/2J	ENSMUSG00185021805	pseudogene	Chr12:941900-942407 (-)
FVB/NJ	ENSMUSG00205003782	pseudogene	Chr12:739567-740074 (-)
JF1/MsJ	ENSUMUG00000036664	pseudogene	Chr12:925162-925669 (-)
LP/J	ENSMUSG00230011653	pseudogene	Chr12:2770011-2770518 (-)
NOD/ShiLtJ	ENSMUSG00190008084	pseudogene	Chr12:2181705-2182212 (-)
NZO/HlLtJ	ENSMUSG00225019707	pseudogene	Chr12:4827589-4828096 (-)
PWK/PhJ	ENSLUMG00010017308	pseudogene	Chr12:754390-754897 (-)
SPRET/EiJ	ENSMSPG00010005171	pseudogene	Chr12:1150313-1150820 (-)
WSB/EiJ	ENSIUOG00005002463	pseudogene	Chr12:940666-941173 (-)

Homology

• Gene Tree
  Gm9088
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112271 (Evidence)
• NCBI Gene
  668289

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112271	Ensembl Gene Model | MGI Sequence Detail	508	C57BL/6J
transcript	ENSMUST00000220237	Ensembl | MGI Sequence Detail	508	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;