Gm6722 Pseudogene Detail

Summary

• Symbol
  Gm6722
• Name
  predicted gene 6722

• Feature Type
  pseudogene
• IDs
  MGI:3648053
  NCBI Gene: 626950
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:83667454-83667843 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 38.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648053	pseudogene	Chr12:83666982-83667954 (-)
129S1/SvImJ	ENSMUSG00200051597	pseudogene	Chr12:75674910-75675299 (-)
A/J	ENSMUSG00195034275	pseudogene	Chr12:78292518-78292907 (-)
AKR/J	ENSMUSG00220049597	pseudogene	Chr12:76087943-76088332 (-)
BALB/cJ	ENSMUSG00180024910	pseudogene	Chr12:77336486-77336875 (-)
C3H/HeJ	ENSMUSG00175045302	pseudogene	Chr12:80424390-80424779 (-)
C57BL/6NJ	ENSMUSG00215047356	pseudogene	Chr12:76642040-76642429 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032479	pseudogene	Chr12:76588371-76588760 (-)
CBA/J	ENSMUSG00210046873	pseudogene	Chr12:76838602-76838991 (-)
DBA/2J	ENSMUSG00185043047	pseudogene	Chr12:78695109-78695498 (-)
FVB/NJ	ENSMUSG00205043891	pseudogene	Chr12:76506014-76506403 (-)
JF1/MsJ	ENSUMUG00000002381	pseudogene	Chr4:18668759-18669147 (-)
JF1/MsJ	ENSUMUG00000049035	pseudogene	Chr12:82694422-82694811 (-)
LP/J	ENSMUSG00230047203	pseudogene	Chr12:85757634-85758023 (-)
NOD/ShiLtJ	ENSMUSG00190049758	pseudogene	Chr12:75895012-75895401 (-)
NZO/HlLtJ	ENSMUSG00225053520	pseudogene	Chr12:87797906-87798295 (-)
PWK/PhJ	ENSLUMG00010002019	pseudogene	Chr4:18117814-18118202 (-)
PWK/PhJ	ENSLUMG00010029832	pseudogene	Chr12:76697192-76697581 (-)
PWK/PhJ	ENSLUMG00010006838	pseudogene	Chr3:81865518-81865906 (+)
SPRET/EiJ	ENSMSPG00010022214	pseudogene	Chr12:79248608-79248996 (-)
SPRET/EiJ	ENSMSPG00010020053	pseudogene	Chr19:18461814-18462202 (+)
SPRET/EiJ	ENSMSPG00010020863	pseudogene	Chr12:78505716-78506103 (-)
SPRET/EiJ	ENSMSPG00010007244	pseudogene	Chr10:2883058-2883446 (+)
WSB/EiJ	ENSIUOG00005047028	pseudogene	Chr12:76530023-76530412 (-)

Homology

• Gene Tree
  Gm6722
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving Gm6722
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000113431 (Evidence)
• NCBI Gene
  626950

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113431	Ensembl Gene Model | MGI Sequence Detail	390	C57BL/6J
transcript	ENSMUST00000221586	Ensembl | MGI Sequence Detail	390	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 2

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm6722:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116964	Chr12:83667947-83667953 (-)	-107 bp