Gm5847 Pseudogene Detail

Summary

• Symbol
  Gm5847
• Name
  predicted gene 5847

• Feature Type
  pseudogene
• IDs
  MGI:3648046
  NCBI Gene: 545530
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:65521010-65522604 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 30.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  203 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648046	pseudogene	Chr3:65520916-65522739 (+)
129S1/SvImJ	ENSMUSG00200001532	pseudogene	Chr3:62273217-62274813 (+)
A/J	ENSMUSG00195026643	pseudogene	Chr3:62385373-62386967 (+)
AKR/J	ENSMUSG00220025011	pseudogene	Chr3:62393387-62394981 (+)
BALB/cJ	ENSMUSG00180008698	pseudogene	Chr3:62411803-62413397 (+)
C3H/HeJ	ENSMUSG00175003603	pseudogene	Chr3:62273699-62275293 (+)
C57BL/6NJ	ENSMUSG00215007270	pseudogene	Chr3:62747563-62749157 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011506	pseudogene	Chr5:9939634-9941220 (+)
CAST/EiJ	ENSTCUG00005002444	pseudogene	Chr3:61992592-61994186 (+)
CBA/J	ENSMUSG00210002379	pseudogene	Chr3:62359327-62360921 (+)
DBA/2J	ENSMUSG00185015292	pseudogene	Chr3:62528089-62529683 (+)
FVB/NJ	ENSMUSG00205004218	pseudogene	Chr3:61519298-61520892 (+)
JF1/MsJ	ENSUMUG00000001272	pseudogene	Chr3:62186253-62187845 (+)
LP/J	ENSMUSG00230002528	pseudogene	Chr3:64557785-64559381 (+)
NOD/ShiLtJ	ENSMUSG00190003277	pseudogene	Chr3:62836626-62838220 (+)
NZO/HlLtJ	ENSMUSG00225002508	pseudogene	Chr3:67275977-67277571 (+)
PWK/PhJ	ENSLUMG00010015122	pseudogene	Chr3:62234617-62236209 (+)
SPRET/EiJ	ENSMSPG00010008228	pseudogene	Chr3:62725205-62726796 (+)
WSB/EiJ	ENSIUOG00005016626	pseudogene	Chr3:62782145-62784976 (+)

Homology

• Gene Tree
  Gm5847
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5847
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082280 (Evidence)
• NCBI Gene
  545530

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082280	Ensembl Gene Model | MGI Sequence Detail	1595	C57BL/6J
transcript	ENSMUST00000178959	Ensembl | MGI Sequence Detail	1595	Not Applicable

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm5847:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr896	Chr3:65520914-65520915 (+)	-95 bp