Gm5560 Pseudogene Detail

Summary

• Symbol
  Gm5560
• Name
  predicted pseudogene 5560

• Feature Type
  pseudogene
• IDs
  MGI:3647980
  NCBI Gene: 433923
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:97412687-97413578 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647980	pseudogene	Chr5:97412610-97413846 (+)
129S1/SvImJ	ENSMUSG00200010106	pseudogene	Chr5:91111611-91112502 (+)
A/J	ENSMUSG00195027137	pseudogene	Chr5:90685196-90686085 (+)
AKR/J	ENSMUSG00220012494	pseudogene	Chr5:90137100-90137989 (+)
BALB/cJ	ENSMUSG00180028455	pseudogene	Chr5:90834869-90835758 (+)
C3H/HeJ	ENSMUSG00175035933	pseudogene	Chr5:92937928-92938817 (+)
C57BL/6NJ	ENSMUSG00215035176	pseudogene	Chr5:90795318-90796209 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039303	pseudogene	Chr5:90195781-90196676 (+)
CBA/J	ENSMUSG00210036438	pseudogene	Chr5:91709628-91710517 (+)
DBA/2J	ENSMUSG00185038720	pseudogene	Chr5:94625669-94626558 (+)
FVB/NJ	ENSMUSG00205036571	pseudogene	Chr5:90608168-90609057 (+)
JF1/MsJ	ENSUMUG00000048509	pseudogene	Chr5:97579852-97580747 (+)
LP/J	ENSMUSG00230029088	pseudogene	Chr5:98675821-98676712 (+)
NOD/ShiLtJ	ENSMUSG00190042334	pseudogene	Chr5:90617521-90618410 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010031704	pseudogene	Chr5:89717001-89717896 (+)
SPRET/EiJ	ENSMSPG00010027860	pseudogene	Chr5:92573983-92574874 (+)
WSB/EiJ	ENSIUOG00005033632	pseudogene	Chr5:93330728-93331617 (+)

Homology

• Gene Tree
  Gm5560
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm5560
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1
• CCDS
  CCDS39176.1

• Ensembl
  ENSMUSG00000067161 (Evidence)
• NCBI Gene
  433923

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000067161	Ensembl Gene Model | MGI Sequence Detail	892	C57BL/6J
transcript	ENSMUST00000086918	Ensembl | MGI Sequence Detail	892	Not Applicable

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:389560 Kubben N, et al., Identification of differential protein interactors of lamin A and progerin. Nucleus. 2010 Nov-Dec;1(6):513-25

TSS for Gm5560:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47430	Chr5:97412603-97412609 (+)	-81 bp