Gm6992 Pseudogene Detail

Summary

• Symbol
  Gm6992
• Name
  predicted gene 6992

• Feature Type
  pseudogene
• IDs
  MGI:3647975
  NCBI Gene: 629656
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:31068217-31069823 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 13.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647975	pseudogene	Chr12:31068107-31070117 (+)
129S1/SvImJ	ENSMUSG00200016080	pseudogene	Chr12:22873041-22874619 (+)
A/J	ENSMUSG00195022611	pseudogene	Chr12:25558799-25560377 (+)
AKR/J	ENSMUSG00220032925	pseudogene	Chr12:23527307-23528885 (+)
BALB/cJ	ENSMUSG00180028340	pseudogene	Chr12:24557955-24559533 (+)
C3H/HeJ	ENSMUSG00175021800	pseudogene	Chr12:27591361-27592939 (+)
C57BL/6NJ	ENSMUSG00215024452	pseudogene	Chr12:23993707-23995313 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010510	pseudogene	Chr12:24367968-24369574 (+)
CBA/J	ENSMUSG00210008758	pseudogene	Chr12:24080725-24082303 (+)
DBA/2J	ENSMUSG00185015836	pseudogene	Chr12:26106450-26108028 (+)
FVB/NJ	ENSMUSG00205006534	pseudogene	Chr12:24138211-24139817 (+)
JF1/MsJ	ENSUMUG00000006854	pseudogene	Chr12:30300789-30302395 (+)
LP/J	ENSMUSG00230023905	pseudogene	Chr12:33064362-33065968 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225031436	pseudogene	Chr12:35261768-35263374 (+)
PWK/PhJ	ENSLUMG00010011561	pseudogene	Chr12:24537680-24539286 (+)
SPRET/EiJ	ENSMSPG00010006001	pseudogene	Chr12:25015142-25016727 (+)
WSB/EiJ	ENSIUOG00005021465	pseudogene	Chr12:23755994-23757600 (+)

Homology

• Gene Tree
  Gm6992
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000112546 (Evidence)
• NCBI Gene
  629656

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112546	Ensembl Gene Model | MGI Sequence Detail	1607	C57BL/6J
transcript	ENSMUST00000217973	Ensembl | MGI Sequence Detail	1607	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22