Psma5-ps Pseudogene Detail

Summary

• Symbol
  Psma5-ps
• Name
  proteasome subunit alpha 5, pseudogene
• Synonyms
  Gm8394

• Feature Type
  pseudogene
• IDs
  MGI:3647964
  NCBI Gene: 666974
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:85149352-85150303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647964	pseudogene	Chr10:85149333-85150303 (+)
129S1/SvImJ	ENSMUSG00200030090	pseudogene	Chr10:81642539-81643490 (+)
A/J	ENSMUSG00195023434	pseudogene	Chr10:82087261-82088212 (+)
AKR/J	ENSMUSG00220049422	pseudogene	Chr10:81689601-81690552 (+)
BALB/cJ	ENSMUSG00180053535	pseudogene	Chr10:82090381-82091332 (+)
C3H/HeJ	ENSMUSG00175023063	pseudogene	Chr10:81966283-81967234 (+)
C57BL/6NJ	ENSMUSG00215029996	pseudogene	Chr10:81639841-81640792 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018027	protein coding gene	Chr12:95652566-95653407 (-)
CAST/EiJ	ENSTCUG00005052196	pseudogene	Chr10:81412920-81413874 (+)
CBA/J	ENSMUSG00210050116	pseudogene	Chr10:81817010-81817961 (+)
DBA/2J	ENSMUSG00185054247	pseudogene	Chr10:82031953-82032904 (+)
FVB/NJ	ENSMUSG00205051588	pseudogene	Chr10:81744187-81745138 (+)
JF1/MsJ	ENSUMUG00000030294	pseudogene	Chr10:83420329-83421284 (+)
LP/J	ENSMUSG00230018757	pseudogene	Chr10:83928782-83929733 (+)
NOD/ShiLtJ	ENSMUSG00190052529	pseudogene	Chr10:82072979-82073930 (+)
NZO/HlLtJ	ENSMUSG00225052887	pseudogene	Chr10:88196241-88197192 (+)
NZO/HlLtJ	ENSMUSG00225021691	pseudogene	Chr3:110194438-110216574 (+)
PWK/PhJ	ENSLUMG00010024611	pseudogene	Chr10:81701247-81702201 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005038849	pseudogene	Chr10:81795649-81796600 (+)

Homology

• Gene Tree
  Psma5-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Psma5-ps
• Incidental Mutations
  APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000050490 (Evidence)
• NCBI Gene
  666974

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050490	Ensembl Gene Model | MGI Sequence Detail	952	C57BL/6J
transcript	ENSMUST00000079684	Ensembl | MGI Sequence Detail	952	Not Applicable

Other
Accession IDs

MGI:6363020

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87