Gm9949 Gene Detail

Summary

• Symbol
  Gm9949
• Name
  predicted gene 9949
• Synonyms
  EG225609

• Feature Type
  protein coding gene
• IDs
  MGI:3647947
  NCBI Gene: 225609
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:62313106-62339461 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 35.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  802 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647947	protein coding gene	Chr18:62313106-62339461 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  12
• UniProt
  1

• NCBI Gene
  225609

Representative Sequences			Length	Strain/Species
genomic	225609	NCBI Gene Model | MGI Sequence Detail	26356	C57BL/6J
transcript	NM_001013754	RefSeq | MGI Sequence Detail	986	C57BL/6
polypeptide	NP_001013776	RefSeq | MGI Sequence Detail	104	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm9949:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151487	Chr18:62313190-62313253 (+)	116 bp
Tssr151488	Chr18:62315997-62316043 (+)	2,914 bp