Gm5922 Gene Detail

Summary

• Symbol
  Gm5922
• Name
  predicted gene 5922

• Feature Type
  lncRNA gene
• IDs
  MGI:3647932
  NCBI Gene: 546166
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr9:119960799-119965440 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 71.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  362 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647932	lncRNA gene	Chr9:119957475-119985007 (-)
129S1/SvImJ	ENSMUSG00200032091	lncRNA gene	Chr9:117083505-117086371 (-)
129S1/SvImJ	ENSMUSG00200026455	protein coding gene	Chr9:117078534-117086617 (-)
A/J	ENSMUSG00195027988	protein coding gene	Chr9:116259748-116268414 (-)
A/J	ENSMUSG00195028446	lncRNA gene	Chr9:116265314-116268168 (-)
AKR/J	ENSMUSG00220020284	lncRNA gene	Chr9:116720475-116723338 (-)
BALB/cJ	ENSMUSG00180029416	lncRNA gene	Chr9:116802593-116805449 (-)
BALB/cJ	ENSMUSG00180026479	protein coding gene	Chr9:116797622-116805695 (-)
C3H/HeJ	ENSMUSG00175019181	lncRNA gene	Chr9:117045903-117048757 (-)
C3H/HeJ	ENSMUSG00175017136	protein coding gene	Chr9:117040932-117049003 (-)
C57BL/6NJ	ENSMUSG00215032841	lncRNA gene	Chr9:116914797-116917664 (-)
C57BL/6NJ	ENSMUSG00215018713	protein coding gene	Chr9:116909818-116917910 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017509	lncRNA gene	Chr9:116672680-116675261 (-)
CBA/J	ENSMUSG00210042884	lncRNA gene	Chr9:116759321-116762185 (-)
DBA/2J	ENSMUSG00185017784	lncRNA gene	Chr9:117093568-117096431 (-)
FVB/NJ	ENSMUSG00205031642	lncRNA gene	Chr9:116934108-116936962 (-)
FVB/NJ	ENSMUSG00205019673	protein coding gene	Chr9:116929137-116937208 (-)
JF1/MsJ	ENSUMUG00000050884	lncRNA gene	Chr9:116946564-116949388 (-)
LP/J	ENSMUSG00230037870	lncRNA gene	Chr9:117211836-117214702 (-)
LP/J	ENSMUSG00230037282	protein coding gene	Chr9:117206865-117214948 (-)
NOD/ShiLtJ	ENSMUSG00190015201	lncRNA gene	Chr9:116693236-116696086 (-)
NOD/ShiLtJ	ENSMUSG00190014163	protein coding gene	Chr9:116688265-116696332 (-)
NZO/HlLtJ	ENSMUSG00225022979	protein coding gene	Chr9:117470836-117479514 (-)
NZO/HlLtJ	ENSMUSG00225023689	lncRNA gene	Chr9:117476402-117479268 (-)
PWK/PhJ	ENSLUMG00010037872	lncRNA gene	Chr9:116842107-116844930 (-)
SPRET/EiJ	ENSMSPG00010024169	lncRNA gene	Chr9:118542707-118545406 (-)
WSB/EiJ	ENSIUOG00005021728	lncRNA gene	Chr9:116148299-116151162 (-)

Homology

• Gene Tree
  Gm5922
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000111028 (Evidence)
• NCBI Gene
  546166

Representative Sequences			Length	Strain/Species
genomic	546166	NCBI Gene Model | MGI Sequence Detail	4642	C57BL/6J
transcript	AK076698	GenBank | ENA | DDBJ | MGI Sequence Detail	1725	C57BL/6J
polypeptide	Q8C620	UniProt | EBI | MGI Sequence Detail	140	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86

TSS for Gm5922:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92023	Chr9:119965401-119965416 (-)	31 bp
Tssr92022	Chr9:119965377-119965395 (-)	54 bp
Tssr92021	Chr9:119964993-119965002 (-)	442 bp
Tssr92020	Chr9:119964896-119964917 (-)	533 bp
Tssr92019	Chr9:119964880-119964892 (-)	554 bp
Tssr92018	Chr9:119964856-119964863 (-)	580 bp
Tssr92017	Chr9:119964098-119964108 (-)	1,337 bp
Tssr92016	Chr9:119964087-119964092 (-)	1,350 bp