Gm8130 Pseudogene Detail

Summary

• Symbol
  Gm8130
• Name
  predicted gene 8130

• Feature Type
  pseudogene
• IDs
  MGI:3647919
  NCBI Gene: 666489
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:22869032-22869601 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 13.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647919	pseudogene	Chr16:22869032-22869601 (+)
129S1/SvImJ	ENSMUSG00200046887	pseudogene	Chr16:19872853-19873422 (+)
A/J	ENSMUSG00195036903	pseudogene	Chr16:19427336-19427905 (+)
AKR/J	ENSMUSG00220045691	pseudogene	Chr16:19746753-19747322 (+)
BALB/cJ	ENSMUSG00180042177	pseudogene	Chr16:19667937-19668506 (+)
C3H/HeJ	ENSMUSG00175050633	pseudogene	Chr16:19812862-19813431 (+)
C57BL/6NJ	ENSMUSG00215041804	pseudogene	Chr16:19540070-19540639 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035937	pseudogene	Chr16:20143677-20144233 (+)
CBA/J	ENSMUSG00210047793	pseudogene	Chr16:19834553-19835122 (+)
DBA/2J	ENSMUSG00185035870	pseudogene	Chr16:19773329-19773898 (+)
FVB/NJ	ENSMUSG00205048963	pseudogene	Chr16:19773997-19774566 (+)
JF1/MsJ	ENSUMUG00000053960	pseudogene	Chr16:19994769-19995338 (+)
LP/J	ENSMUSG00230034082	pseudogene	Chr16:22352373-22352942 (+)
NOD/ShiLtJ	ENSMUSG00190050123	pseudogene	Chr16:19914753-19915322 (+)
NZO/HlLtJ	ENSMUSG00225039251	pseudogene	Chr16:25603487-25604056 (+)
PWK/PhJ	ENSLUMG00010050256	pseudogene	Chr16:19817971-19818540 (+)
SPRET/EiJ	ENSMSPG00010046986	pseudogene	Chr16:19701180-19701749 (+)
WSB/EiJ	ENSIUOG00005043314	pseudogene	Chr16:20018972-20019541 (+)

Homology

• Gene Tree
  Gm8130
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116637 (Evidence)
• NCBI Gene
  666489

Representative Sequences			Length	Strain/Species
genomic	666489	NCBI Gene Model | MGI Sequence Detail	570	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8130:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137638	Chr16:22868974-22868977 (+)	-56 bp
Tssr4821	Chr16:22869094-22869117 (+)	74 bp