Gm5605 Pseudogene Detail

Summary

• Symbol
  Gm5605
• Name
  predicted gene 5605

• Feature Type
  pseudogene
• IDs
  MGI:3647902
  NCBI Gene: 100417643
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:5167361-5168665 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 2.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647902	pseudogene	Chr8:5167281-5168859 (+)
129S1/SvImJ	ENSMUSG00200012576	pseudogene	Chr8:2055423-2056769 (+)
A/J	ENSMUSG00195010437	pseudogene	Chr8:2397338-2398642 (+)
AKR/J	ENSMUSG00220011271	pseudogene	Chr8:2117792-2119096 (+)
BALB/cJ	ENSMUSG00180005130	pseudogene	Chr8:2050249-2051553 (+)
C3H/HeJ	ENSMUSG00175008574	pseudogene	Chr8:2158036-2159340 (+)
C57BL/6NJ	ENSMUSG00215009274	pseudogene	Chr8:2077117-2078421 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021928	pseudogene	Chr8:2082345-2083708 (+)
CBA/J	ENSMUSG00210011009	pseudogene	Chr8:2036833-2038137 (+)
DBA/2J	ENSMUSG00185004213	pseudogene	Chr8:2171662-2172966 (+)
FVB/NJ	ENSMUSG00205005604	pseudogene	Chr8:2096066-2097370 (+)
JF1/MsJ	ENSUMUG00000042009	pseudogene	Chr8:2181448-2182794 (+)
LP/J	ENSMUSG00230008013	pseudogene	Chr8:4341117-4342421 (+)
NOD/ShiLtJ	ENSMUSG00190012166	pseudogene	Chr8:2152782-2154086 (+)
NZO/HlLtJ	ENSMUSG00225019800	pseudogene	Chr8:12197864-12199169 (+)
PWK/PhJ	ENSLUMG00010010997	pseudogene	Chr8:2094656-2096013 (+)
SPRET/EiJ	ENSMSPG00010018015	pseudogene	Chr8:2029162-2030472 (+)
WSB/EiJ	ENSIUOG00005005516	pseudogene	Chr8:2085416-2086720 (+)

Homology

• Gene Tree
  Gm5605
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109181 (Evidence)
• NCBI Gene
  100417643

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109181	Ensembl Gene Model | MGI Sequence Detail	1305	C57BL/6J
transcript	ENSMUST00000208940	Ensembl | MGI Sequence Detail	1305	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5605:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76145	Chr8:5167299-5167322 (+)	-50 bp
Tssr76146	Chr8:5167324-5167351 (+)	-23 bp