Gm5487 Pseudogene Detail

Summary

• Symbol
  Gm5487
• Name
  predicted gene 5487

• Feature Type
  pseudogene
• IDs
  MGI:3647872
  NCBI Gene: 433027
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:53804291-53806447 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 33.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  221 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647872	pseudogene	Chr16:53804195-53806570 (+)
129S1/SvImJ	ENSMUSG00200021456	pseudogene	Chr16:50677916-50680072 (+)
129S1/SvImJ	ENSMUSG00200026532	pseudogene	Chr6:105907183-105909334 (+)
A/J	ENSMUSG00195003474	pseudogene	Chr16:50299149-50301305 (+)
AKR/J	ENSMUSG00220022706	pseudogene	Chr16:50677487-50679643 (+)
BALB/cJ	ENSMUSG00180028869	pseudogene	Chr16:50492541-50494697 (+)
C3H/HeJ	ENSMUSG00175018255	pseudogene	Chr16:50799252-50801408 (+)
C57BL/6NJ	ENSMUSG00215025301	pseudogene	Chr16:50610154-50612310 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014576	pseudogene	Chr16:50875008-50877164 (+)
CBA/J	ENSMUSG00210019768	pseudogene	Chr16:50769994-50772150 (+)
DBA/2J	ENSMUSG00185011001	pseudogene	Chr16:50672639-50674795 (+)
FVB/NJ	ENSMUSG00205013179	pseudogene	Chr16:50568251-50570407 (+)
FVB/NJ	ENSMUSG00205030266	pseudogene	Chr6:104855186-104857337 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230008699	pseudogene	Chr16:53227935-53230091 (+)
LP/J	ENSMUSG00230002033	pseudogene	Chr6:107413604-107415755 (+)
NOD/ShiLtJ	ENSMUSG00190007312	pseudogene	Chr16:50710885-50713041 (+)
NZO/HlLtJ	ENSMUSG00225026233	pseudogene	Chr16:56332557-56334713 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005026583	pseudogene	Chr6:106162044-106164195 (+)
WSB/EiJ	ENSIUOG00005009219	pseudogene	Chr16:50876619-50878775 (+)

Homology

• Gene Tree
  Gm5487
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000116912 (Evidence)
• NCBI Gene
  433027

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116912	Ensembl Gene Model | MGI Sequence Detail	2157	C57BL/6J
transcript	ENSMUST00000232039	Ensembl | MGI Sequence Detail	2157	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;