Gm6438 Pseudogene Detail

Summary

• Symbol
  Gm6438
• Name
  predicted gene 6438

• Feature Type
  pseudogene
• IDs
  MGI:3647845
  NCBI Gene: 623519
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:16786473-16786932 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 10.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647845	pseudogene	Chr16:16786473-16786935 (+)
129S1/SvImJ	ENSMUSG00200048641	pseudogene	Chr16:13782997-13783456 (+)
A/J	ENSMUSG00195035600	pseudogene	Chr16:13340200-13340659 (+)
AKR/J	ENSMUSG00220045515	pseudogene	Chr16:13656529-13656988 (+)
BALB/cJ	ENSMUSG00180043077	pseudogene	Chr16:13581493-13581952 (+)
C3H/HeJ	ENSMUSG00175050755	pseudogene	Chr16:13726508-13726967 (+)
C57BL/6NJ	ENSMUSG00215042928	pseudogene	Chr16:13447637-13448096 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045419	pseudogene	Chr16:13643107-13643566 (+)
CBA/J	ENSMUSG00210048017	pseudogene	Chr16:13742835-13743294 (+)
DBA/2J	ENSMUSG00185034582	pseudogene	Chr16:13688996-13689455 (+)
FVB/NJ	ENSMUSG00205047458	pseudogene	Chr16:13696566-13697025 (+)
JF1/MsJ	ENSUMUG00000054258	pseudogene	Chr16:13774422-13774881 (+)
LP/J	ENSMUSG00230045755	pseudogene	Chr16:16266921-16267380 (+)
NOD/ShiLtJ	ENSMUSG00190051340	pseudogene	Chr16:13828936-13829395 (+)
NZO/HlLtJ	ENSMUSG00225032193	pseudogene	Chr16:19512729-19513188 (+)
PWK/PhJ	ENSLUMG00010050827	pseudogene	Chr16:13657491-13657950 (+)
SPRET/EiJ	ENSMSPG00010046761	pseudogene	Chr16:13686634-13687092 (+)
WSB/EiJ	ENSIUOG00005045200	pseudogene	Chr16:13820480-13820939 (+)

Homology

• Gene Tree
  Gm6438
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116598 (Evidence)
• NCBI Gene
  623519

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116598	Ensembl Gene Model | MGI Sequence Detail	460	C57BL/6J
transcript	ENSMUST00000232160	Ensembl | MGI Sequence Detail	460	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;