Gm5084 Gene Detail

Summary

• Symbol
  Gm5084
• Name
  predicted gene 5084

• Feature Type
  lncRNA gene
• IDs
  MGI:3647835
  NCBI Gene: 100503759
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:60353285-60363832 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 31.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  502 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647835	lncRNA gene	Chr13:60353285-60363837 (+)
129S1/SvImJ	ENSMUSG00200017422	lncRNA gene	Chr13:57257654-57268202 (+)
A/J	ENSMUSG00195046695	lncRNA gene	Chr13:56724904-56735440 (+)
AKR/J	ENSMUSG00220044210	lncRNA gene	Chr13:56255742-56266294 (+)
BALB/cJ	ENSMUSG00180016797	lncRNA gene	Chr13:56961592-56972106 (+)
C3H/HeJ	ENSMUSG00175045173	lncRNA gene	Chr13:56753292-56763842 (+)
C57BL/6NJ	ENSMUSG00215040670	lncRNA gene	Chr13:56760921-56771476 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018614	protein coding gene	Chr13:55593376-55594360 (+)
CAST/EiJ	ENSTCUG00005042497	lncRNA gene	Chr13:57141501-57152021 (+)
CBA/J	ENSMUSG00210041173	lncRNA gene	Chr13:56958127-56968679 (+)
DBA/2J	ENSMUSG00185018884	lncRNA gene	Chr13:57801200-57811754 (+)
FVB/NJ	ENSMUSG00205042388	lncRNA gene	Chr13:56565024-56575577 (+)
JF1/MsJ	ENSUMUG00000042006	lncRNA gene	Chr13:57162283-57172905 (+)
LP/J	ENSMUSG00230034424	lncRNA gene	Chr13:67168143-67178670 (+)
NOD/ShiLtJ	ENSMUSG00190032701	lncRNA gene	Chr13:56807616-56818147 (+)
NZO/HlLtJ	ENSMUSG00225034851	lncRNA gene	Chr13:60857297-60867845 (+)
PWK/PhJ	ENSLUMG00010024066	lncRNA gene	Chr13:56088351-56098929 (+)
SPRET/EiJ	ENSMSPG00010041816	lncRNA gene	Chr13:56503169-56513249 (+)
WSB/EiJ	ENSIUOG00005027608	lncRNA gene	Chr13:56274029-56285348 (+)

Homology

• Gene Tree
  Gm5084
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000050765 (Evidence)
• NCBI Gene
  100503759

Representative Sequences			Length	Strain/Species
genomic	100503759	NCBI Gene Model | MGI Sequence Detail	10548	C57BL/6J
transcript	NR_036449	RefSeq | MGI Sequence Detail	3604	C57BL/6
polypeptide	Q8CAZ1	UniProt | EBI | MGI Sequence Detail	111	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  Genomic 2

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 13
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582