Gm10382 Gene Detail

Summary

• Symbol
  Gm10382
• Name
  predicted gene 10382
• Synonyms
  EG639281

• Feature Type
  lncRNA gene
• IDs
  MGI:3647829
  NCBI Gene: 639281
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:125466386-125467619 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 64.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647829	lncRNA gene	Chr5:125466140-125467622 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0030110	protein coding gene	Chr5:129231041-129232274 (+)
A/J	MGP_AJ_G0030076	protein coding gene	Chr5:123819658-123820891 (+)
AKR/J	MGP_AKRJ_G0030011	protein coding gene	Chr5:127832490-127833724 (+)
BALB/cJ	MGP_BALBcJ_G0030087	protein coding gene	Chr5:125155293-125156526 (+)
C3H/HeJ	MGP_C3HHeJ_G0029804	protein coding gene	Chr5:128443020-128444254 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0030540	protein coding gene	Chr5:134234941-134236173 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027765	protein coding gene	Chr5:118356211-118358841 (+)
CAST/EiJ	MGP_CASTEiJ_G0029213	protein coding gene	Chr5:127578958-127580189 (+)
CBA/J	MGP_CBAJ_G0029774	protein coding gene	Chr5:139499044-139500278 (+)
DBA/2J	MGP_DBA2J_G0029924	protein coding gene	Chr5:123837392-123838626 (+)
FVB/NJ	MGP_FVBNJ_G0029880	protein coding gene	Chr5:122911040-122912272 (+)
LP/J	MGP_LPJ_G0030013	protein coding gene	Chr5:129755693-129756926 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029911	protein coding gene	Chr5:143011136-143012370 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030581	protein coding gene	Chr5:127453109-127454342 (+)
PWK/PhJ	MGP_PWKPhJ_G0028927	protein coding gene	Chr5:122679751-122680981 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0028764	protein coding gene	Chr5:125086421-125087651 (+)
WSB/EiJ	MGP_WSBEiJ_G0029287	protein coding gene	Chr5:128151793-128153025 (+)

Homology

• Gene Tree
  Gm10382
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10382
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• Gm10382 interacts with 67 markers (Mir10b, Mir19a, Mir27a, ...) View All

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000072612 (Evidence)
• NCBI Gene
  639281

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072612	Ensembl Gene Model | MGI Sequence Detail	1234	C57BL/6J
transcript	ENSMUST00000238478	Ensembl | MGI Sequence Detail	1234	Not Applicable
polypeptide	Q3V0T5	UniProt | EBI | MGI Sequence Detail	144	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm10382:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48926	Chr5:125466332-125466337 (+)	-51 bp
Tssr48927	Chr5:125466348-125466391 (+)	-16 bp
Tssr48928	Chr5:125466392-125466403 (+)	12 bp
Tssr48929	Chr5:125466404-125466421 (+)	27 bp
Tssr48930	Chr5:125466550-125466557 (+)	168 bp
Tssr1638	Chr5:125466908-125466933 (+)	535 bp
Tssr48931	Chr5:125467435-125467471 (+)	1,067 bp