Gm6858 Pseudogene Detail

Summary

• Symbol
  Gm6858
• Name
  predicted gene 6858

• Feature Type
  pseudogene
• IDs
  MGI:3647823
  NCBI Gene: 628237
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:72093488-72094167 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 37.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647823	pseudogene	ChrX:72093488-72095079 (+)
129S1/SvImJ	ENSMUSG00200043513	pseudogene	ChrX:54227704-54229171 (+)
A/J	ENSMUSG00195036626	pseudogene	ChrX:57843794-57845261 (+)
AKR/J	ENSMUSG00220047511	pseudogene	ChrX:53146547-53148014 (+)
BALB/cJ	ENSMUSG00180051132	pseudogene	ChrX:54424623-54426090 (+)
C3H/HeJ	ENSMUSG00175037482	pseudogene	ChrX:57995021-57996488 (+)
C57BL/6NJ	ENSMUSG00215042888	pseudogene	ChrX:54494828-54496295 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043554	pseudogene	ChrX:55922309-55923776 (+)
CBA/J	ENSMUSG00210044949	pseudogene	ChrX:54665612-54667079 (+)
DBA/2J	ENSMUSG00185036172	pseudogene	ChrX:67110536-67112003 (+)
FVB/NJ	ENSMUSG00205039662	pseudogene	ChrX:54159091-54160558 (+)
JF1/MsJ	ENSUMUG00000049889	pseudogene	ChrX:87863996-87865460 (+)
LP/J	ENSMUSG00230037455	pseudogene	ChrX:73675958-73677425 (+)
NOD/ShiLtJ	ENSMUSG00190046011	pseudogene	ChrX:53928243-53929710 (+)
NZO/HlLtJ	ENSMUSG00225049333	pseudogene	ChrX:78880297-78881764 (+)
PWK/PhJ	ENSLUMG00010046501	pseudogene	ChrX:53745438-53746902 (+)
SPRET/EiJ	ENSMSPG00010040448	pseudogene	ChrX:56746681-56748168 (+)
WSB/EiJ	ENSIUOG00005049372	pseudogene	ChrX:54772127-54773594 (+)

Homology

• Gene Tree
  Gm6858
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109025 (Evidence)
• NCBI Gene
  628237

Representative Sequences			Length	Strain/Species
genomic	628237	NCBI Gene Model | MGI Sequence Detail	680	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;