Gm5723 Pseudogene Detail

Summary

• Symbol
  Gm5723
• Name
  predicted gene 5723

• Feature Type
  pseudogene
• IDs
  MGI:3647796
  NCBI Gene: 435912
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:95227282-95231496 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 44.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647796	pseudogene	Chr6:95227282-95231496 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013610	pseudogene	Chr6:97039848-97044062 (+)
A/J	MGP_AJ_G0013591	pseudogene	Chr6:93359366-93363571 (+)
AKR/J	MGP_AKRJ_G0013553	pseudogene	Chr6:95924378-95928592 (+)
BALB/cJ	MGP_BALBcJ_G0013572	pseudogene	Chr6:93309491-93313696 (+)
C3H/HeJ	MGP_C3HHeJ_G0013366	pseudogene	Chr6:88490333-88494547 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013957	pseudogene	Chr6:99466222-99470436 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013113	pseudogene	Chr6:96134413-96138627 (+)
CBA/J	MGP_CBAJ_G0013391	pseudogene	Chr6:103280201-103284415 (+)
DBA/2J	MGP_DBA2J_G0013471	pseudogene	Chr6:92505244-92509449 (+)
FVB/NJ	MGP_FVBNJ_G0013470	pseudogene	Chr6:91716001-91720206 (+)
LP/J	MGP_LPJ_G0013548	pseudogene	Chr6:97043052-97047266 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013483	pseudogene	Chr6:107204929-107209134 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013948	pseudogene	Chr6:95798823-95803037 (+)
PWK/PhJ	MGP_PWKPhJ_G0012918	pseudogene	Chr6:91519916-91524340 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012699	pseudogene	Chr6:94734300-94738512 (+)
WSB/EiJ	MGP_WSBEiJ_G0013161	pseudogene	Chr6:96265089-96269294 (+)

Homology

• Gene Tree
  Gm5723
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000107900 (Evidence)
• NCBI Gene
  435912

Representative Sequences			Length	Strain/Species
genomic	435912	NCBI Gene Model | MGI Sequence Detail	4215	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5723:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57822	Chr6:95227245-95227255 (+)	-32 bp