Gm5257 Pseudogene Detail

Summary

• Symbol
  Gm5257
• Name
  predicted gene 5257

• Feature Type
  pseudogene
• IDs
  MGI:3647791
  NCBI Gene: 383531
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:75613034-75613823 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 39.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  186 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647791	pseudogene	Chr1:75613022-75613865 (+)
129S1/SvImJ	ENSMUSG00200035255	pseudogene	Chr1:73282696-73283499 (+)
A/J	ENSMUSG00195010896	pseudogene	Chr1:72707911-72708717 (+)
AKR/J	ENSMUSG00220010457	pseudogene	Chr1:72852441-72853257 (+)
BALB/cJ	ENSMUSG00180021192	pseudogene	Chr1:72962865-72963654 (+)
C3H/HeJ	ENSMUSG00175018026	pseudogene	Chr1:73108276-73109082 (+)
C57BL/6NJ	ENSMUSG00215026390	pseudogene	Chr1:73008178-73008967 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009170	pseudogene	Chr1:69122693-69123495 (+)
CAST/EiJ	ENSTCUG00005028853	pseudogene	Chr1:72725150-72725956 (+)
CBA/J	ENSMUSG00210044205	pseudogene	Chr1:72797163-72797966 (+)
DBA/2J	ENSMUSG00185034011	pseudogene	Chr1:73886127-73886930 (+)
FVB/NJ	ENSMUSG00205039642	pseudogene	Chr1:72463204-72463993 (+)
JF1/MsJ	ENSUMUG00000007079	pseudogene	Chr1:72785735-72786541 (+)
LP/J	ENSMUSG00230014807	pseudogene	Chr1:73876091-73876894 (+)
NOD/ShiLtJ	ENSMUSG00190040130	pseudogene	Chr1:73016619-73017408 (+)
NZO/HlLtJ	ENSMUSG00225040991	pseudogene	Chr1:77090854-77091657 (+)
PWK/PhJ	ENSLUMG00010014024	pseudogene	Chr1:72364796-72365602 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005014151	pseudogene	Chr1:72633788-72634593 (+)

Homology

• Gene Tree
  Gm5257
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5257
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082012 (Evidence)
• NCBI Gene
  383531

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082012	Ensembl Gene Model | MGI Sequence Detail	790	C57BL/6J
transcript	ENSMUST00000121823	Ensembl | MGI Sequence Detail	790	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm5257:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126	Chr1:75613681-75613682 (+)	648 bp