Gm5257 Pseudogene Detail

Summary

• Symbol
  Gm5257
• Name
  predicted gene 5257

• Feature Type
  pseudogene
• IDs
  MGI:3647791
  NCBI Gene: 383531
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:75613034-75613823 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 39.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647791	pseudogene	Chr1:75613022-75613865 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010209	pseudogene	Chr1:76237396-76238199 (+)
A/J	MGP_AJ_G0010201	pseudogene	Chr1:73573686-73574492 (+)
AKR/J	MGP_AKRJ_G0010175	pseudogene	Chr1:75609170-75610094 (+)
BALB/cJ	MGP_BALBcJ_G0010179	pseudogene	Chr1:73636330-73637610 (+)
C3H/HeJ	MGP_C3HHeJ_G0010116	pseudogene	Chr1:75940982-75941788 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010434	pseudogene	Chr1:79187988-79188777 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009170	pseudogene	Chr1:69122693-69123495 (+)
CAST/EiJ	MGP_CASTEiJ_G0009944	pseudogene	Chr1:75288959-75289765 (+)
CBA/J	MGP_CBAJ_G0010085	pseudogene	Chr1:81787318-81788121 (+)
DBA/2J	MGP_DBA2J_G0010113	pseudogene	Chr1:72889699-72890502 (+)
FVB/NJ	MGP_FVBNJ_G0010133	pseudogene	Chr1:72103602-72104391 (+)
LP/J	MGP_LPJ_G0010197	pseudogene	Chr1:77360597-77361400 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010094	pseudogene	Chr1:85097790-85098555 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010411	pseudogene	Chr1:75681908-75682711 (+)
PWK/PhJ	MGP_PWKPhJ_G0009847	pseudogene	Chr1:72364735-72365652 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010009	pseudogene	Chr1:75488588-75489394 (+)

Homology

• Gene Tree
  Gm5257
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5257
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082012 (Evidence)
• NCBI Gene
  383531

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082012	Ensembl Gene Model | MGI Sequence Detail	790	C57BL/6J
transcript	ENSMUST00000121823	Ensembl | MGI Sequence Detail	790	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm5257:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126	Chr1:75613681-75613682 (+)	648 bp