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Rpl6l Pseudogene Detail
Summary
  • Symbol
    Rpl6l
  • Name
    ribosomal protein L6-like
  • Synonyms
    Gm5428
Location &
Maps
more
  • Sequence Map
    Chr10:110961712-110962582 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 58.17 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    51 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647789
 pseudogene Chr10:110961697-110962641 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035752
 protein coding gene ChrX:53961158-53961987 (-)
A/J MGP_AJ_G0032560
 protein coding gene Chr7:101888428-101889215 (-)
AKR/J MGP_AKRJ_G0032496
 protein coding gene Chr7:104326655-104327181 (-)
BALB/cJ MGP_BALBcJ_G0032571
 protein coding gene Chr7:101582084-101582885 (-)
C3H/HeJ MGP_C3HHeJ_G0032286
 protein coding gene Chr7:104719153-104721690 (-)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0032946
 protein coding gene ChrX:8649294-8650428 (-)
CAST/EiJ MGP_CASTEiJ_G0034555
 protein coding gene ChrX:9608658-9609320 (+)
CBA/J MGP_CBAJ_G0024120
 protein coding gene Chr18:49188608-49194017 (-)
DBA/2J MGP_DBA2J_G0024250
 protein coding gene Chr18:44183697-44184596 (-)
FVB/NJ MGP_FVBNJ_G0024217
 protein coding gene Chr18:43757688-43758320 (+)
LP/J MGP_LPJ_G0024335
 protein coding gene Chr18:46338443-46339075 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032394
 protein coding gene Chr7:113609138-113620826 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024876
 protein coding gene Chr18:45741249-45741805 (-)
PWK/PhJ MGP_PWKPhJ_G0034256
 protein coding gene ChrX:9198163-9198987 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034097
 protein coding gene ChrX:9839460-9839912 (+)
WSB/EiJ MGP_WSBEiJ_G0034840
 protein coding gene ChrX:50651034-50651570 (-)



Homology
more
  • Human Ortholog
    RPL6, ribosomal protein L6
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPL6, ribosomal protein L6
  • Synonyms
    eL6, L6, SHUJUN-2, TAXREB107, TXREB1
  • Links
    NCBI Gene ID: 6128
    neXtProt AC: NX_Q02878
    UniProt: Q02878

  • Chr Location
    12q24.13; chr12:112405181-112418838 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000091086 Ensembl Gene Model | MGI Sequence Detail 871 C57BL/6J ±  kb
transcript ENSMUST00000171120 Ensembl | MGI Sequence Detail 871 Not Applicable  
polypeptide XP_036012022 RefSeq | MGI Sequence Detail 309 C57BL/6J  
For the selected sequence
References
more
  • Summaries
    All 10
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory