Gm6498 Pseudogene Detail

Summary

• Symbol
  Gm6498
• Name
  predicted gene 6498

• Feature Type
  pseudogene
• IDs
  MGI:3647773
  NCBI Gene: 624367
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:48464658-48465663 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 24.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647773	pseudogene	Chr14:48436173-48465870 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039667	pseudogene	Chr14:42025334-42056297 (+)
A/J	MGP_AJ_G0039664	pseudogene	Chr14:40726245-40754793 (+)
AKR/J	MGP_AKRJ_G0039590	pseudogene	Chr14:42310062-42339522 (+)
BALB/cJ	MGP_BALBcJ_G0039638	pseudogene	Chr14:40777010-40806088 (+)
C3H/HeJ	MGP_C3HHeJ_G0039300	pseudogene	Chr14:42099944-42131615 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040191	pseudogene	Chr14:43767404-43799474 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036834	pseudogene	Chr14:40061785-40090964 (+)
CAST/EiJ	MGP_CASTEiJ_G0038420	pseudogene	Chr14:39226723-39258001 (+)
CBA/J	MGP_CBAJ_G0039269	pseudogene	Chr14:45193945-45226774 (+)
DBA/2J	MGP_DBA2J_G0039461	pseudogene	Chr14:40610777-40639341 (+)
FVB/NJ	MGP_FVBNJ_G0039418	pseudogene	Chr14:40348025-40380266 (+)
LP/J	MGP_LPJ_G0039504	pseudogene	Chr14:42276935-42306593 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039422	pseudogene	Chr14:44504609-44537244 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040296	pseudogene	Chr14:41846927-41877964 (+)
PWK/PhJ	MGP_PWKPhJ_G0038094	pseudogene	Chr14:37493112-37522328 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037845	pseudogene	Chr14:37984727-38014949 (+)
WSB/EiJ	MGP_WSBEiJ_G0038652	pseudogene	Chr14:41952658-41982245 (+)

Homology

• Gene Tree
  Gm6498
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  1 involving Gm6498
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000063885 (Evidence)
• NCBI Gene
  624367

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000063885	Ensembl Gene Model | MGI Sequence Detail	1006	C57BL/6J
transcript	ENSMUST00000181413	Ensembl | MGI Sequence Detail	1006	Not Applicable
polypeptide	Q8BJ40	UniProt | EBI | MGI Sequence Detail	209	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site
  IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
  IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
  IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family
  IPR036291 NAD(P)-binding domain superfamily

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Gm6498:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125339	Chr14:48464583-48464587 (+)	-73 bp