Gm6498 Pseudogene Detail

Summary

• Symbol
  Gm6498
• Name
  predicted gene 6498

• Feature Type
  pseudogene
• IDs
  MGI:3647773
  NCBI Gene: 624367
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:48464658-48465663 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 24.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647773	pseudogene	Chr14:48436173-48465870 (+)
129S1/SvImJ	ENSMUSG00200017376	pseudogene	Chr14:37301805-37302810 (+)
A/J	ENSMUSG00195024932	pseudogene	Chr14:37507319-37508324 (+)
AKR/J	ENSMUSG00220039031	pseudogene	Chr14:36882209-36883214 (+)
BALB/cJ	ENSMUSG00180047741	pseudogene	Chr14:37116111-37117116 (+)
C3H/HeJ	ENSMUSG00175030577	pseudogene	Chr14:38796513-38797518 (+)
C57BL/6NJ	ENSMUSG00215038711	pseudogene	Chr14:37486016-37487021 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036834	pseudogene	Chr14:40061785-40090964 (+)
CAST/EiJ	ENSTCUG00005010580	pseudogene	Chr14:39286223-39287228 (+)
CBA/J	ENSMUSG00210044631	pseudogene	Chr14:37441732-37442737 (+)
DBA/2J	ENSMUSG00185056234	pseudogene	Chr14:42214563-42215568 (+)
FVB/NJ	ENSMUSG00205046822	pseudogene	Chr14:36639346-36640351 (+)
JF1/MsJ	ENSUMUG00000053477	pseudogene	Chr14:54261817-54262822 (+)
LP/J	ENSMUSG00230053276	pseudogene	Chr14:54470545-54471550 (+)
NOD/ShiLtJ	ENSMUSG00190046056	pseudogene	Chr14:37113277-37114282 (+)
NZO/HlLtJ	ENSMUSG00225052089	pseudogene	Chr14:44731795-44732800 (+)
PWK/PhJ	ENSLUMG00010040449	pseudogene	Chr14:36709192-36710197 (+)
SPRET/EiJ	ENSMSPG00010003567	pseudogene	Chr14:40062818-40063822 (+)
WSB/EiJ	ENSIUOG00005042022	pseudogene	Chr14:37005929-37006934 (+)

Homology

• Gene Tree
  Gm6498
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  1 involving Gm6498
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000063885 (Evidence)
• NCBI Gene
  624367

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000063885	Ensembl Gene Model | MGI Sequence Detail	1006	C57BL/6J
transcript	ENSMUST00000181413	Ensembl | MGI Sequence Detail	1006	Not Applicable
polypeptide	Q8BJ40	UniProt | EBI | MGI Sequence Detail	209	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• EC
  1.2.1.12
• InterPro Domains
  IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site
  IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
  IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
  IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family
  IPR036291 NAD(P)-binding domain superfamily

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Gm6498:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125339	Chr14:48464583-48464587 (+)	-73 bp