Gm6478 Pseudogene Detail

Summary

• Symbol
  Gm6478
• Name
  predicted pseudogene 6478

• Feature Type
  pseudogene
• IDs
  MGI:3647766
  NCBI Gene: 624180
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:62183236-62183977 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 32.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647766	pseudogene	Chr13:62182963-62183977 (+)
129S1/SvImJ	ENSMUSG00200017315	pseudogene	Chr13:58893091-58893650 (-)
A/J	ENSMUSG00195047267	pseudogene	Chr13:58461122-58461866 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175045559	pseudogene	Chr13:58590999-58591740 (+)
C57BL/6NJ	ENSMUSG00215040337	pseudogene	Chr13:58593406-58594147 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010211	pseudogene	Chr17:66657174-66657867 (+)
CAST/EiJ	ENSTCUG00005042011	pseudogene	Chr13:59012956-59013700 (+)
CBA/J	ENSMUSG00210044731	pseudogene	Chr13:58790512-58791253 (+)
DBA/2J	ENSMUSG00185018784	pseudogene	Chr13:59639132-59639873 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230035967	pseudogene	Chr13:69011044-69011788 (+)
NOD/ShiLtJ	ENSMUSG00190035901	pseudogene	Chr13:58576746-58577490 (+)
NZO/HlLtJ	ENSMUSG00225047539	pseudogene	Chr13:62690410-62691151 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010044400	pseudogene	Chr13:58223775-58224519 (+)
SPRET/EiJ	ENSMSPG00010044714	pseudogene	Chr13:58115234-58115978 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6478
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6478
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000074868 (Evidence)
• NCBI Gene
  624180

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074868	Ensembl Gene Model | MGI Sequence Detail	742	C57BL/6J
transcript	ENSMUST00000099450	Ensembl | MGI Sequence Detail	742	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69