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Gm5839 Pseudogene Detail
Summary
  • Symbol
    Gm5839
  • Name
    predicted gene 5839
  • Feature Type
    pseudogene
  • IDs
    MGI:3647737
    NCBI Gene: 545470
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr18:48759771-48760777 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 25.46 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    27 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647737
 pseudogene Chr18:48759753-48760976 (+)
129S1/SvImJ MGP_129S1SvImJ_G0011444
 pseudogene Chr18:47552079-47553085 (+)
A/J MGP_AJ_G0011442
 pseudogene Chr18:45795996-45797002 (+)
AKR/J MGP_AKRJ_G0011406
 pseudogene Chr18:47063522-47064528 (+)
BALB/cJ MGP_BALBcJ_G0011421
 pseudogene Chr18:45901249-45902254 (+)
C3H/HeJ MGP_C3HHeJ_G0011306
 pseudogene Chr18:47157489-47158494 (+)
C57BL/6NJ MGP_C57BL6NJ_G0011710
 pseudogene Chr18:49190399-49191405 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0010264
 pseudogene Chr18:45525325-45526331 (+)
CAST/EiJ MGP_CASTEiJ_G0011111
 pseudogene Chr18:47135141-47136146 (+)
CBA/J MGP_CBAJ_G0011282
 pseudogene Chr18:50505015-50506020 (+)
DBA/2J MGP_DBA2J_G0011335
 pseudogene Chr18:45411085-45412090 (+)
FVB/NJ MGP_FVBNJ_G0011341
 pseudogene Chr18:44957123-44958129 (+)
LP/J MGP_LPJ_G0011404
 pseudogene Chr18:47593922-47594928 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0011334
 pseudogene Chr18:51972037-51973043 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0011696
 pseudogene Chr18:46998945-46999951 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0010795
 pseudogene Chr18:47188312-47189316 (+)
WSB/EiJ MGP_WSBEiJ_G0011143
 pseudogene Chr18:46883638-46884643 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097965 Ensembl Gene Model | MGI Sequence Detail 1007 C57BL/6J ±  kb
transcript ENSMUST00000182835 Ensembl | MGI Sequence Detail 1007 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 5
    Phenotypes 1
  • Earliest
    J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory