Gm5839 Pseudogene Detail

Summary

• Symbol
  Gm5839
• Name
  predicted gene 5839

• Feature Type
  pseudogene
• IDs
  MGI:3647737
  NCBI Gene: 545470
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:48759771-48760777 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 25.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  239 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647737	pseudogene	Chr18:48759753-48760976 (+)
129S1/SvImJ	ENSMUSG00200031201	pseudogene	Chr18:45803091-45804097 (+)
A/J	ENSMUSG00195025219	pseudogene	Chr18:45954051-45955057 (+)
AKR/J	ENSMUSG00220021672	pseudogene	Chr18:45898513-45899519 (+)
BALB/cJ	ENSMUSG00180007940	pseudogene	Chr18:46434361-46435366 (+)
C3H/HeJ	ENSMUSG00175011163	pseudogene	Chr18:45946648-45947653 (+)
C57BL/6NJ	ENSMUSG00215008725	pseudogene	Chr18:45645320-45646326 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010264	pseudogene	Chr18:45525325-45526331 (+)
CAST/EiJ	ENSTCUG00005013850	pseudogene	Chr18:45358546-45359551 (+)
CBA/J	ENSMUSG00210022514	pseudogene	Chr18:45997950-45998955 (+)
DBA/2J	ENSMUSG00185028371	pseudogene	Chr18:45898662-45899667 (+)
FVB/NJ	ENSMUSG00205015056	pseudogene	Chr18:45382706-45383712 (+)
JF1/MsJ	ENSUMUG00000028364	pseudogene	Chr18:45913608-45914404 (+)
LP/J	ENSMUSG00230029538	pseudogene	Chr18:47979690-47980696 (+)
NOD/ShiLtJ	ENSMUSG00190029786	pseudogene	Chr18:45681479-45682485 (+)
NZO/HlLtJ	ENSMUSG00225027734	pseudogene	Chr18:47877153-47878159 (+)
PWK/PhJ	ENSLUMG00010022463	pseudogene	Chr18:46044569-46045365 (+)
SPRET/EiJ	ENSMSPG00010013715	pseudogene	Chr18:46250229-46251233 (+)
WSB/EiJ	ENSIUOG00005009860	pseudogene	Chr18:45597813-45598818 (+)

Homology

• Gene Tree
  Gm5839
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm5839
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097965 (Evidence)
• NCBI Gene
  545470

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097965	Ensembl Gene Model | MGI Sequence Detail	1007	C57BL/6J
transcript	ENSMUST00000182835	Ensembl | MGI Sequence Detail	1007	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67