Gm7429 Pseudogene Detail

Summary

• Symbol
  Gm7429
• Name
  predicted pseudogene 7429

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3647718
  NCBI Gene: 664969
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:113890667-113891014 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 49.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647718	pseudogene	ChrX:113890622-113891082 (-)
129S1/SvImJ	ENSMUSG00200024779	pseudogene	ChrX:95707831-95708178 (-)
129S1/SvImJ	ENSMUSG00200024254	protein coding gene	ChrX:95707731-95708252 (-)
A/J	ENSMUSG00195026481	pseudogene	ChrX:99393463-99393810 (-)
AKR/J	ENSMUSG00220013533	pseudogene	ChrX:93686196-93686543 (-)
AKR/J	ENSMUSG00220013403	protein coding gene	ChrX:93686146-93686617 (-)
BALB/cJ	ENSMUSG00180026542	pseudogene	ChrX:96045729-96046076 (-)
C3H/HeJ	ENSMUSG00175028817	pseudogene	ChrX:99651465-99651812 (-)
C57BL/6NJ	ENSMUSG00215014786	pseudogene	ChrX:96360099-96360446 (-)
C57BL/6NJ	ENSMUSG00215011892	protein coding gene	ChrX:96360057-96360515 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050152	pseudogene	Chr7:25036932-25037279 (+)
CAST/EiJ	ENSTCUG00005002300	pseudogene	Chr1:190362114-190362460 (+)
CAST/EiJ	ENSTCUG00005021395	pseudogene	ChrX:97039891-97040238 (-)
CAST/EiJ	ENSTCUG00005005369	pseudogene	Chr6:51063455-51063802 (+)
CBA/J	ENSMUSG00210022328	pseudogene	ChrX:96519584-96519931 (-)
DBA/2J	ENSMUSG00185029903	pseudogene	ChrX:109046969-109047316 (-)
FVB/NJ	ENSMUSG00205021397	pseudogene	ChrX:95560909-95561256 (-)
FVB/NJ	ENSMUSG00205018241	protein coding gene	ChrX:95560854-95561330 (-)
JF1/MsJ	ENSUMUG00000018553	pseudogene	ChrX:129613725-129614072 (-)
LP/J	ENSMUSG00230005163	protein coding gene	ChrX:115674642-115675118 (-)
LP/J	ENSMUSG00230005612	pseudogene	ChrX:115674697-115675044 (-)
NOD/ShiLtJ	ENSMUSG00190013794	pseudogene	ChrX:95779152-95779499 (-)
NOD/ShiLtJ	ENSMUSG00190013461	protein coding gene	ChrX:95779102-95779573 (-)
NZO/HlLtJ	ENSMUSG00225040846	pseudogene	ChrX:120848008-120848355 (-)
NZO/HlLtJ	ENSMUSG00225040292	protein coding gene	ChrX:120847908-120848383 (-)
PWK/PhJ	ENSLUMG00010026465	pseudogene	ChrX:94890619-94890966 (-)
SPRET/EiJ	ENSMSPG00010022961	pseudogene	ChrX:99281378-99281725 (-)
WSB/EiJ	ENSIUOG00005015049	pseudogene	ChrX:96142521-96142868 (-)

Homology

• Gene Tree
  Gm7429
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000082260 (Evidence)
• NCBI Gene
  664969

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082260	Ensembl Gene Model | MGI Sequence Detail	348	C57BL/6J
transcript	ENSMUST00000118664	Ensembl | MGI Sequence Detail	348	Not Applicable
polypeptide	NP_001357882	RefSeq | MGI Sequence Detail	115	C57BL/6

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7429:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164091	ChrX:113891084-113891087 (-)	-72 bp