Gm6647 Pseudogene Detail

Summary

• Symbol
  Gm6647
• Name
  predicted gene 6647

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3647714
  NCBI Gene: 626053
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:13818676-13821901 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 5.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  390 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647714	pseudogene	Chr5:13817258-13822081 (+)
129S1/SvImJ	ENSMUSG00200012221	pseudogene	Chr5:10149275-10152481 (+)
A/J	ENSMUSG00195012399	pseudogene	Chr5:9706809-9710034 (+)
AKR/J	ENSMUSG00220002110	pseudogene	Chr5:9794058-9797283 (+)
BALB/cJ	ENSMUSG00180017653	pseudogene	Chr5:9490107-9493332 (+)
BALB/cJ	ENSMUSG00180015251	protein coding gene	Chr5:9488643-9493605 (+)
C3H/HeJ	ENSMUSG00175029282	pseudogene	Chr5:9378700-9381925 (+)
C57BL/6NJ	ENSMUSG00215012612	protein coding gene	Chr5:10176711-10206279 (+)
C57BL/6NJ	ENSMUSG00215023325	pseudogene	Chr5:10178175-10181400 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001804	pseudogene	Chr5:9717703-9720934 (+)
CBA/J	ENSMUSG00210005715	pseudogene	Chr5:10251799-10255024 (+)
DBA/2J	ENSMUSG00185017831	pseudogene	Chr5:10849851-10853076 (+)
FVB/NJ	ENSMUSG00205008961	pseudogene	Chr5:9436162-9439387 (+)
JF1/MsJ	ENSUMUG00000003052	pseudogene	Chr5:11200537-11203746 (+)
LP/J	ENSMUSG00230003801	pseudogene	Chr5:14827415-14830621 (+)
NOD/ShiLtJ	ENSMUSG00190013054	pseudogene	Chr5:9743464-9746689 (+)
NZO/HlLtJ	ENSMUSG00225009475	pseudogene	Chr5:18503037-18506262 (+)
PWK/PhJ	ENSLUMG00010020403	pseudogene	Chr5:9918211-9921451 (+)
SPRET/EiJ	ENSMSPG00010005002	pseudogene	Chr5:10071218-10074457 (+)
WSB/EiJ	ENSIUOG00005026779	pseudogene	Chr5:9836103-9839343 (+)

Homology

• Gene Tree
  Gm6647
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000090991 (Evidence)
• NCBI Gene
  626053

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090991	Ensembl Gene Model | MGI Sequence Detail	3226	C57BL/6J
transcript	ENSMUST00000170514	Ensembl | MGI Sequence Detail	641	Not Applicable
polypeptide	NP_001365194	RefSeq | MGI Sequence Detail	249	C57BL/6

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;