Gm5270 Pseudogene Detail

Summary

• Symbol
  Gm5270
• Name
  predicted gene 5270

• Feature Type
  pseudogene
• IDs
  MGI:3647658
  NCBI Gene: 383769
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:161096376-161097377 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 81.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647658	pseudogene	Chr2:161096159-161097395 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011955	pseudogene	Chr2:166477864-166478813 (-)
A/J	MGP_AJ_G0011951	pseudogene	Chr2:159798547-159799426 (-)
AKR/J	MGP_AKRJ_G0011916	pseudogene	Chr2:164528958-164529798 (-)
BALB/cJ	MGP_BALBcJ_G0011928	pseudogene	Chr2:160109984-160114567 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012225	pseudogene	Chr2:171391702-171392576 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010691	pseudogene	Chr2:153152866-153153867 (-)
CAST/EiJ	MGP_CASTEiJ_G0011592	pseudogene	Chr2:165238590-165239500 (-)
CBA/J	MGP_CBAJ_G0011781	pseudogene	Chr2:177590991-177591992 (-)
DBA/2J	MGP_DBA2J_G0011834	pseudogene	Chr2:158968650-158969651 (-)
FVB/NJ	MGP_FVBNJ_G0011842	pseudogene	Chr2:157366299-157367300 (-)
LP/J	MGP_LPJ_G0011902	pseudogene	Chr2:166584967-166585968 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011841	pseudogene	Chr2:181288928-181289931 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012228	pseudogene	Chr2:164359831-164361561 (-)
PWK/PhJ	MGP_PWKPhJ_G0011442	pseudogene	Chr2:158520848-158521849 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011256	pseudogene	Chr2:163239674-163240679 (-)
WSB/EiJ	MGP_WSBEiJ_G0011613	pseudogene	Chr2:165248828-165251112 (-)

Homology

• Gene Tree
  Gm5270
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000081099 (Evidence)
• NCBI Gene
  383769

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081099	Ensembl Gene Model | MGI Sequence Detail	1002	C57BL/6J
transcript	ENSMUST00000121506	Ensembl | MGI Sequence Detail	1002	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;