Gm5442 Pseudogene Detail

Summary

• Symbol
  Gm5442
• Name
  predicted gene 5442

• Feature Type
  pseudogene
• IDs
  MGI:3647655
  NCBI Gene: 432715
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88052081-88054174 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 42.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647655	pseudogene	Chr12:88052071-88054174 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180016726	pseudogene	Chr12:81623583-81625676 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215047042	pseudogene	Chr12:80807601-80809697 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032554	pseudogene	Chr12:80757316-80759409 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205042608	pseudogene	Chr12:80645512-80646453 (-)
JF1/MsJ	ENSUMUG00000053032	pseudogene	Chr12:87251088-87253178 (-)
JF1/MsJ	ENSUMUG00000050250	pseudogene	Chr12:87619392-87621518 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190027175	pseudogene	Chr12:104711712-104713857 (-)
NZO/HlLtJ	ENSMUSG00225052953	pseudogene	Chr12:91916527-91918620 (+)
PWK/PhJ	ENSLUMG00010003570	pseudogene	Chr12:80959469-80961563 (-)
SPRET/EiJ	ENSMSPG00010001175	pseudogene	Chr12:83816144-83818265 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5442
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5442
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000106721 (Evidence)
• NCBI Gene
  432715

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106721	Ensembl Gene Model | MGI Sequence Detail	2094	C57BL/6J
transcript	ENSMUST00000202121	Ensembl | MGI Sequence Detail	2034	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;