Gm4876 Gene Detail

Summary

• Symbol
  Gm4876
• Name
  predicted gene 4876

• Feature Type
  lncRNA gene
• IDs
  MGI:3647654
  NCBI Gene: 232599
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:17076260-17171832 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 7.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3582 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647654	lncRNA gene	Chr6:17065009-17172213 (-)
129S1/SvImJ	ENSMUSG00200019176	protein coding gene	Chr6:14137741-14219100 (-)
129S1/SvImJ	ENSMUSG00200020086	lncRNA gene	Chr6:14105540-14219112 (-)
A/J	ENSMUSG00195012578	protein coding gene	Chr6:14088853-14163671 (-)
A/J	ENSMUSG00195013108	lncRNA gene	Chr6:14056618-14163679 (-)
AKR/J	ENSMUSG00220001123	lncRNA gene	Chr6:13630502-13737574 (-)
AKR/J	ENSMUSG00220000915	protein coding gene	Chr6:13662737-13737566 (-)
BALB/cJ	ENSMUSG00180001284	protein coding gene	Chr6:14232569-14307381 (-)
BALB/cJ	ENSMUSG00180001359	lncRNA gene	Chr6:14200335-14307391 (-)
C3H/HeJ	ENSMUSG00175016593	lncRNA gene	Chr6:13986691-14093733 (-)
C3H/HeJ	ENSMUSG00175016330	protein coding gene	Chr6:14018925-14093725 (-)
C57BL/6NJ	ENSMUSG00215008587	protein coding gene	Chr6:14152862-14227967 (-)
C57BL/6NJ	ENSMUSG00215012731	lncRNA gene	Chr6:14120640-14227979 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003820	antisense lncRNA gene	Chr6:12685676-12795094 (-)
CAST/EiJ	ENSTCUG00005022024	lncRNA gene	Chr6:13822884-13936873 (-)
CBA/J	ENSMUSG00210005962	protein coding gene	Chr6:14046490-14121290 (-)
CBA/J	ENSMUSG00210007029	lncRNA gene	Chr6:14014254-14121298 (-)
DBA/2J	ENSMUSG00185026513	lncRNA gene	Chr6:14140766-14247814 (-)
DBA/2J	ENSMUSG00185025223	protein coding gene	Chr6:14172997-14247806 (-)
FVB/NJ	ENSMUSG00205008446	lncRNA gene	Chr6:14071030-14178091 (-)
FVB/NJ	ENSMUSG00205007205	protein coding gene	Chr6:14103262-14178083 (-)
JF1/MsJ	ENSUMUG00000001820	lncRNA gene	Chr6:13919810-14027807 (-)
LP/J	ENSMUSG00230002236	protein coding gene	Chr6:15168387-15249720 (-)
LP/J	ENSMUSG00230003230	lncRNA gene	Chr6:15136186-15249730 (-)
NOD/ShiLtJ	ENSMUSG00190010072	protein coding gene	Chr6:13930733-14005851 (-)
NOD/ShiLtJ	ENSMUSG00190010310	lncRNA gene	Chr6:13898513-14005863 (-)
NZO/HlLtJ	ENSMUSG00225006164	lncRNA gene	Chr6:17026707-17133742 (-)
NZO/HlLtJ	ENSMUSG00225004819	protein coding gene	Chr6:17058939-17133734 (-)
PWK/PhJ	ENSLUMG00010020074	lncRNA gene	Chr6:13641708-13750538 (-)
SPRET/EiJ	ENSMSPG00010015129	lncRNA gene	Chr6:13895294-14025192 (-)
WSB/EiJ	ENSIUOG00005003845	lncRNA gene	Chr6:14112281-14225068 (-)

Homology

• Gene Tree
  Gm4876
  

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  77
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000054556 (Evidence)
• NCBI Gene
  232599

Representative Sequences			Length	Strain/Species
genomic	232599	NCBI Gene Model | MGI Sequence Detail	95573	C57BL/6J
transcript	NR_153844	RefSeq | MGI Sequence Detail	2241	C57BL/6
polypeptide	Q8C8H6	UniProt | EBI | MGI Sequence Detail	124	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 13
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm4876:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59905	Chr6:17171578-17171620 (-)	233 bp
Tssr59904	Chr6:17171566-17171577 (-)	260 bp