Gm6336 Pseudogene Detail

Summary

• Symbol
  Gm6336
• Name
  predicted pseudogene 6336

• Feature Type
  pseudogene
• IDs
  MGI:3647630
  NCBI Gene: 622589
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:128512027-128512518 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 77.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647630	pseudogene	Chr10:128511980-128512607 (-)
129S1/SvImJ	ENSMUSG00200013453	pseudogene	Chr10:124870121-124870612 (-)
A/J	ENSMUSG00195017405	pseudogene	Chr10:125333408-125333899 (-)
AKR/J	ENSMUSG00220006217	pseudogene	Chr10:124938613-124939104 (-)
BALB/cJ	ENSMUSG00180011773	pseudogene	Chr10:125324398-125324889 (-)
C3H/HeJ	ENSMUSG00175006245	pseudogene	Chr10:125323852-125324343 (-)
C57BL/6NJ	ENSMUSG00215023511	pseudogene	Chr10:124930516-124931007 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042539	pseudogene	Chr10:124316560-124317051 (-)
CBA/J	ENSMUSG00210009324	pseudogene	Chr10:125148057-125148548 (-)
DBA/2J	ENSMUSG00185027426	pseudogene	Chr10:125297606-125298097 (-)
FVB/NJ	ENSMUSG00205025269	pseudogene	Chr10:124539023-124539514 (-)
JF1/MsJ	ENSUMUG00000046470	pseudogene	Chr10:126607212-126607703 (-)
LP/J	ENSMUSG00230033505	pseudogene	Chr10:127223383-127223874 (-)
NOD/ShiLtJ	ENSMUSG00190016658	pseudogene	Chr10:125361218-125361709 (-)
NZO/HlLtJ	ENSMUSG00225037478	pseudogene	Chr10:131422176-131422667 (-)
PWK/PhJ	ENSLUMG00010010747	pseudogene	Chr10:125063606-125064097 (-)
SPRET/EiJ	ENSMSPG00010038515	pseudogene	Chr10:127021949-127022443 (-)
WSB/EiJ	ENSIUOG00005008954	pseudogene	Chr10:124945151-124945642 (-)

Homology

• Gene Tree
  Gm6336
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000118400 (Evidence)
• NCBI Gene
  622589

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118400	Ensembl Gene Model | MGI Sequence Detail	492	C57BL/6J
transcript	ENSMUST00000238743	Ensembl | MGI Sequence Detail	492	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6336:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99923	Chr10:128512600-128512609 (-)	-87 bp