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Gm5878 Gene Detail
Summary
  • Symbol
    Gm5878
  • Name
    predicted gene 5878
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3647625
    NCBI Gene: 545861
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:85088397-85103076 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 37.13 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647625
 lncRNA gene Chr6:85088397-85103107 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030947
 protein coding gene Chr6:86228701-86247343 (-)
A/J MGP_AJ_G0030916
 protein coding gene Chr6:82933242-82947259 (-)
AKR/J MGP_AKRJ_G0030844
 protein coding gene Chr6:85340496-85360556 (-)
BALB/cJ MGP_BALBcJ_G0030926
 protein coding gene Chr6:82952323-82967814 (-)
C3H/HeJ MGP_C3HHeJ_G0030784
 protein coding gene Chr6:99071622-99094077 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031386
 protein coding gene Chr6:88602515-88620067 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0030035
 protein coding gene Chr6:85374178-85391324 (-)
CBA/J MGP_CBAJ_G0030613
 protein coding gene Chr6:92096130-92124139 (-)
DBA/2J MGP_DBA2J_G0030766
 protein coding gene Chr6:82238220-82257188 (-)
FVB/NJ MGP_FVBNJ_G0030719
 protein coding gene Chr6:81441467-81461196 (-)
LP/J MGP_LPJ_G0030845
 protein coding gene Chr6:86215005-86243334 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030755
 protein coding gene Chr6:96301545-96328354 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031410
 protein coding gene Chr6:85160123-85177261 (-)
PWK/PhJ MGP_PWKPhJ_G0029750
 protein coding gene Chr6:81174139-81193959 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029578
 protein coding gene Chr6:84009274-84027945 (-)
WSB/EiJ MGP_WSBEiJ_G0030116
 protein coding gene Chr6:85594667-85612240 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 545861 NCBI Gene Model | MGI Sequence Detail 14680 C57BL/6J ±  kb
transcript NR_168059 RefSeq | MGI Sequence Detail 4644 C57BL/6  
polypeptide Q3V139 UniProt | EBI | MGI Sequence Detail 96 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Phenotypes 7
  • Earliest
    J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory