Gm8253 Pseudogene Detail

Summary

• Symbol
  Gm8253
• Name
  predicted gene 8253

• Feature Type
  pseudogene
• IDs
  MGI:3647612
  NCBI Gene: 666717
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:28769675-28770107 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 19.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647612	pseudogene	Chr16:28769634-28770161 (-)
129S1/SvImJ	ENSMUSG00200036555	pseudogene	Chr16:25779625-25780057 (-)
A/J	ENSMUSG00195030620	pseudogene	Chr16:25334038-25334470 (-)
AKR/J	ENSMUSG00220035377	pseudogene	Chr16:25607496-25607928 (-)
BALB/cJ	ENSMUSG00180032436	pseudogene	Chr16:25556049-25556481 (-)
C3H/HeJ	ENSMUSG00175040489	pseudogene	Chr16:25703701-25704133 (-)
C57BL/6NJ	ENSMUSG00215022337	pseudogene	Chr16:25452650-25453082 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038364	pseudogene	Chr16:25997897-25998328 (-)
CBA/J	ENSMUSG00210040904	pseudogene	Chr16:25745762-25746194 (-)
DBA/2J	ENSMUSG00185019984	pseudogene	Chr16:25661132-25661564 (-)
FVB/NJ	ENSMUSG00205026746	pseudogene	Chr16:25692791-25693223 (-)
JF1/MsJ	ENSUMUG00000044191	pseudogene	Chr16:25850879-25851310 (-)
LP/J	ENSMUSG00230034890	pseudogene	Chr16:28230985-28231417 (-)
NOD/ShiLtJ	ENSMUSG00190037952	pseudogene	Chr16:25844537-25844969 (-)
NZO/HlLtJ	ENSMUSG00225040441	pseudogene	Chr16:31465938-31466370 (-)
PWK/PhJ	ENSLUMG00010036771	pseudogene	Chr16:25689905-25690336 (-)
SPRET/EiJ	ENSMSPG00010020413	pseudogene	Chr16:25622910-25623342 (-)
WSB/EiJ	ENSIUOG00005036807	pseudogene	Chr16:25888237-25888295 (+)
WSB/EiJ	ENSIUOG00005036822	pseudogene	Chr16:25886739-25887162 (-)

Homology

• Gene Tree
  Gm8253
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000116861 (Evidence)
• NCBI Gene
  666717

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116861	Ensembl Gene Model | MGI Sequence Detail	433	C57BL/6J
transcript	ENSMUST00000232466	Ensembl | MGI Sequence Detail	433	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8253:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140676	Chr16:28770148-28770170 (-)	-52 bp