Gm6419 Pseudogene Detail

Summary

• Symbol
  Gm6419
• Name
  predicted gene 6419

• Feature Type
  pseudogene
• IDs
  MGI:3647564
  NCBI Gene: 623346
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:74698820-74699248 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 38.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647564	pseudogene	Chr10:74698677-74699366 (-)
129S1/SvImJ	ENSMUSG00200017720	pseudogene	Chr10:71399748-71400176 (-)
A/J	ENSMUSG00195005708	pseudogene	Chr10:71711791-71712219 (-)
AKR/J	ENSMUSG00220029393	pseudogene	Chr10:71371555-71371983 (-)
BALB/cJ	ENSMUSG00180007929	pseudogene	Chr10:71726279-71726707 (-)
C3H/HeJ	ENSMUSG00175012702	pseudogene	Chr10:71597637-71598065 (-)
C57BL/6NJ	ENSMUSG00215004094	pseudogene	Chr10:71335212-71335640 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009995	pseudogene	Chr14:107290811-107291242 (-)
CAST/EiJ	ENSTCUG00005027659	pseudogene	Chr10:71205949-71206377 (-)
CBA/J	ENSMUSG00210009766	pseudogene	Chr10:71453827-71454255 (-)
DBA/2J	ENSMUSG00185021187	pseudogene	Chr10:71796190-71796618 (-)
FVB/NJ	ENSMUSG00205007562	pseudogene	Chr10:71489888-71490316 (-)
JF1/MsJ	ENSUMUG00000056371	pseudogene	Chr10:72940641-72941069 (-)
LP/J	ENSMUSG00230051383	pseudogene	Chr10:73565811-73566239 (-)
NOD/ShiLtJ	ENSMUSG00190008108	pseudogene	Chr10:71762935-71763363 (-)
NZO/HlLtJ	ENSMUSG00225048613	pseudogene	Chr10:77862287-77862715 (-)
PWK/PhJ	ENSLUMG00010007995	pseudogene	Chr10:71330790-71331218 (-)
SPRET/EiJ	ENSMSPG00010048124	pseudogene	Chr10:73115244-73115670 (-)
WSB/EiJ	ENSIUOG00005034530	pseudogene	Chr10:71359397-71359825 (-)

Homology

• Gene Tree
  Gm6419
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6419
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000072407 (Evidence)
• NCBI Gene
  623346

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072407	Ensembl Gene Model | MGI Sequence Detail	429	C57BL/6J
transcript	ENSMUST00000097166	Ensembl | MGI Sequence Detail	429	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm6419:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98094	Chr10:74699341-74699345 (-)	-95 bp