Gm6496 Pseudogene Detail

Summary

• Symbol
  Gm6496
• Name
  predicted gene 6496

• Feature Type
  pseudogene
• IDs
  MGI:3647560
  NCBI Gene: 624348
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:77243635-77244036 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 47.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647560	pseudogene	Chr17:77243635-77244036 (+)
129S1/SvImJ	ENSMUSG00200024826	pseudogene	Chr17:72593212-72593613 (+)
A/J	ENSMUSG00195028488	pseudogene	Chr17:73956220-73956621 (+)
AKR/J	ENSMUSG00220013670	pseudogene	Chr17:72868609-72869010 (+)
BALB/cJ	ENSMUSG00180005085	pseudogene	Chr17:73666160-73666561 (+)
C3H/HeJ	ENSMUSG00175016017	pseudogene	Chr17:72972889-72973290 (+)
C57BL/6NJ	ENSMUSG00215016921	pseudogene	Chr17:72666594-72666995 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015503	pseudogene	Chr17:73508016-73508417 (+)
CBA/J	ENSMUSG00210020782	pseudogene	Chr17:72836426-72836827 (+)
DBA/2J	ENSMUSG00185012914	pseudogene	Chr17:75669624-75670025 (+)
FVB/NJ	ENSMUSG00205030455	pseudogene	Chr17:73429343-73429744 (+)
JF1/MsJ	ENSUMUG00000025495	pseudogene	Chr17:75365664-75366065 (+)
LP/J	ENSMUSG00230022516	pseudogene	Chr17:76634215-76634616 (+)
NOD/ShiLtJ	ENSMUSG00190009864	pseudogene	Chr17:72717654-72718055 (+)
NZO/HlLtJ	ENSMUSG00225029009	pseudogene	Chr17:78903035-78903436 (+)
PWK/PhJ	ENSLUMG00010005838	pseudogene	Chr17:72584816-72585217 (+)
SPRET/EiJ	ENSMSPG00010008785	pseudogene	Chr17:72977556-72977957 (+)
WSB/EiJ	ENSIUOG00005010570	pseudogene	Chr17:73638212-73638613 (+)

Homology

• Gene Tree
  Gm6496
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117388 (Evidence)
• NCBI Gene
  624348

Representative Sequences			Length	Strain/Species
genomic	624348	NCBI Gene Model | MGI Sequence Detail	402	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;