Gm5969 Pseudogene Detail

Summary

• Symbol
  Gm5969
• Name
  predicted gene 5969

• Feature Type
  pseudogene
• IDs
  MGI:3647555
  NCBI Gene: 546710
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:32273782-32274883 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 17.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647555	pseudogene	Chr18:32273782-32274905 (+)
129S1/SvImJ	ENSMUSG00200016384	pseudogene	Chr18:29263425-29264547 (+)
A/J	ENSMUSG00195002503	pseudogene	Chr18:29452929-29454051 (+)
AKR/J	ENSMUSG00220011632	pseudogene	Chr18:29420957-29422079 (+)
BALB/cJ	ENSMUSG00180003497	pseudogene	Chr18:29928411-29929533 (+)
C3H/HeJ	ENSMUSG00175024812	pseudogene	Chr18:29443723-29444845 (+)
C57BL/6NJ	ENSMUSG00215021994	pseudogene	Chr18:29144318-29145440 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016373	pseudogene	Chr18:29074766-29075888 (+)
CBA/J	ENSMUSG00210016283	pseudogene	Chr18:29451854-29452976 (+)
DBA/2J	ENSMUSG00185022684	pseudogene	Chr18:29386435-29387557 (+)
FVB/NJ	ENSMUSG00205023934	pseudogene	Chr18:29130469-29131591 (+)
JF1/MsJ	ENSUMUG00000026932	pseudogene	Chr18:29515814-29516936 (+)
LP/J	ENSMUSG00230049012	pseudogene	Chr18:31461012-31462134 (+)
NOD/ShiLtJ	ENSMUSG00190007176	pseudogene	Chr18:29180443-29181565 (+)
NZO/HlLtJ	ENSMUSG00225047690	pseudogene	Chr18:31383978-31385100 (+)
PWK/PhJ	ENSLUMG00010003602	pseudogene	Chr18:29667462-29668584 (+)
SPRET/EiJ	ENSMSPG00010022416	pseudogene	Chr18:29692211-29693348 (+)
WSB/EiJ	ENSIUOG00005002735	pseudogene	Chr18:29191856-29192978 (+)

Homology

• Gene Tree
  Gm5969
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117606 (Evidence)
• NCBI Gene
  546710

Representative Sequences			Length	Strain/Species
genomic	546710	NCBI Gene Model | MGI Sequence Detail	1102	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;