Gm8618 Pseudogene Detail

Summary

• Symbol
  Gm8618
• Name
  predicted gene 8618

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3647540
  NCBI Gene: 667414
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:134037106-134037537 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 58.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647540	pseudogene	Chr1:134037084-134037588 (+)
129S1/SvImJ	ENSMUSG00200009146	pseudogene	Chr1:131640498-131640929 (+)
A/J	ENSMUSG00195045567	pseudogene	Chr1:130715756-130716187 (+)
AKR/J	ENSMUSG00220050909	pseudogene	Chr1:130585159-130585590 (+)
BALB/cJ	ENSMUSG00180039108	pseudogene	Chr1:131263869-131264300 (+)
C3H/HeJ	ENSMUSG00175048025	pseudogene	Chr1:130960038-130960469 (+)
C57BL/6NJ	ENSMUSG00215045882	pseudogene	Chr1:130965524-130965955 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038903	pseudogene	Chr1:129877588-129878019 (+)
CBA/J	ENSMUSG00210028181	pseudogene	Chr1:130880629-130881060 (+)
DBA/2J	ENSMUSG00185035362	pseudogene	Chr1:135251928-135252359 (+)
FVB/NJ	ENSMUSG00205045919	pseudogene	Chr1:130217193-130217624 (+)
JF1/MsJ	ENSUMUG00000052921	pseudogene	Chr1:134400566-134400996 (+)
LP/J	ENSMUSG00230039184	pseudogene	Chr1:134798766-134799197 (+)
NOD/ShiLtJ	ENSMUSG00190047026	pseudogene	Chr1:130894784-130895215 (+)
NZO/HlLtJ	ENSMUSG00225021524	pseudogene	Chr1:138552047-138552478 (+)
PWK/PhJ	ENSLUMG00010029772	pseudogene	Chr1:130030965-130031396 (+)
SPRET/EiJ	ENSMSPG00010046035	pseudogene	Chr1:132829449-132829879 (+)
WSB/EiJ	ENSIUOG00005048053	pseudogene	Chr1:130634269-130634700 (+)

Homology

• Gene Tree
  Gm8618
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm8618
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000073559 (Evidence)
• NCBI Gene
  667414

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073559	Ensembl Gene Model | MGI Sequence Detail	432	C57BL/6J
transcript	ENSMUST00000097570	Ensembl | MGI Sequence Detail	432	Not Applicable
polypeptide	XP_036010771	RefSeq | MGI Sequence Detail	143	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm8618:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8856	Chr1:134037074-134037081 (+)	-28 bp