Gm6651 Pseudogene Detail

Summary

• Symbol
  Gm6651
• Name
  predicted gene 6651

• Feature Type
  pseudogene
• IDs
  MGI:3647491
  NCBI Gene: 626075
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:106367330-106367600 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647491	pseudogene	Chr1:106367279-106367603 (+)
129S1/SvImJ	ENSMUSG00200000529	pseudogene	Chr1:103665819-103666089 (+)
A/J	ENSMUSG00195007934	pseudogene	Chr1:103150994-103151264 (+)
AKR/J	ENSMUSG00220000296	pseudogene	Chr1:103242977-103243247 (+)
BALB/cJ	ENSMUSG00180000540	pseudogene	Chr1:103436847-103437117 (+)
C3H/HeJ	ENSMUSG00175000623	pseudogene	Chr1:103366100-103366370 (+)
C57BL/6NJ	ENSMUSG00215007310	pseudogene	Chr1:103362256-103362526 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012954	pseudogene	ChrX:130372913-130373177 (-)
CAST/EiJ	ENSTCUG00005002878	pseudogene	Chr1:102698279-102698548 (+)
CBA/J	ENSMUSG00210000284	pseudogene	Chr1:103246258-103246528 (+)
DBA/2J	ENSMUSG00185008754	pseudogene	Chr1:107689041-107689311 (+)
FVB/NJ	ENSMUSG00205008637	pseudogene	Chr1:102550462-102550732 (+)
JF1/MsJ	ENSUMUG00000000248	pseudogene	Chr1:106273628-106273897 (+)
LP/J	ENSMUSG00230000318	pseudogene	Chr1:106951841-106952111 (+)
NOD/ShiLtJ	ENSMUSG00190000733	pseudogene	Chr1:103305634-103305904 (+)
NZO/HlLtJ	ENSMUSG00225000435	pseudogene	Chr1:110842382-110842652 (+)
PWK/PhJ	ENSLUMG00010000193	pseudogene	Chr1:102685626-102685895 (+)
SPRET/EiJ	ENSMSPG00010000640	pseudogene	Chr1:104945917-104946186 (+)
WSB/EiJ	ENSIUOG00005001014	pseudogene	Chr1:103052210-103052480 (+)

Homology

• Gene Tree
  Gm6651
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm6651
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000099604 (Evidence)
• NCBI Gene
  626075

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099604	Ensembl Gene Model | MGI Sequence Detail	271	C57BL/6J
transcript	ENSMUST00000189471	Ensembl | MGI Sequence Detail	271	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm6651:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr174	Chr1:106367236-106367248 (+)	-88 bp