Gm6653 Gene Detail

Summary

• Symbol
  Gm6653
• Name
  predicted gene 6653

• Feature Type
  lncRNA gene
• IDs
  MGI:3647484
  NCBI Gene: 626115
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:87970425-87971715 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647484	lncRNA gene	Chr10:87970417-87971766 (-)
129S1/SvImJ	ENSMUSG00200030480	unclassified gene	Chr10:84468350-84469637 (-)
A/J	ENSMUSG00195023265	unclassified gene	Chr10:84912879-84914165 (-)
AKR/J	ENSMUSG00220022689	unclassified gene	Chr10:84519390-84520676 (-)
BALB/cJ	ENSMUSG00180033673	unclassified gene	Chr10:84915924-84917210 (-)
C3H/HeJ	ENSMUSG00175022760	unclassified gene	Chr10:84806381-84807667 (-)
C57BL/6NJ	ENSMUSG00215029390	unclassified gene	Chr10:84470956-84472243 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037443	unclassified gene	Chr10:84179892-84181180 (-)
CBA/J	ENSMUSG00210038657	unclassified gene	Chr10:84646830-84648116 (-)
DBA/2J	ENSMUSG00185044559	unclassified gene	Chr10:84872516-84873802 (-)
FVB/NJ	ENSMUSG00205019648	unclassified gene	Chr10:84495157-84496446 (-)
JF1/MsJ	ENSUMUG00000022308	unclassified gene	Chr10:86203970-86205260 (-)
LP/J	ENSMUSG00230018270	unclassified gene	Chr10:86750907-86752194 (-)
NOD/ShiLtJ	ENSMUSG00190019876	unclassified gene	Chr10:84898157-84899443 (-)
NZO/HlLtJ	ENSMUSG00225053568	unclassified gene	Chr10:91021472-91022758 (-)
PWK/PhJ	ENSLUMG00010023325	unclassified gene	Chr10:84495064-84496354 (-)
SPRET/EiJ	ENSMSPG00010036104	unclassified gene	Chr10:85993468-85994756 (-)
WSB/EiJ	ENSIUOG00005037411	unclassified gene	Chr10:84577662-84578949 (-)

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000112026 (Evidence), ENSMUSG00000136853 (Evidence)
• NCBI Gene
  626115

Representative Sequences			Length	Strain/Species
genomic	626115	NCBI Gene Model | MGI Sequence Detail	1291	C57BL/6J
transcript	NR_169022	RefSeq | MGI Sequence Detail	1291	C57BL/6
polypeptide	Q3V0Y3	UniProt | EBI | MGI Sequence Detail	191	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm6653:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98824	Chr10:87971698-87971724 (-)	4 bp
Tssr98823	Chr10:87971686-87971691 (-)	26 bp
Tssr98822	Chr10:87971669-87971681 (-)	40 bp
Tssr98821	Chr10:87971641-87971648 (-)	70 bp