Rps8-ps1 Pseudogene Detail

Summary

• Symbol
  Rps8-ps1
• Name
  ribosomal protein S8, pseudogene 1
• Synonyms
  Gm6998

• Feature Type
  pseudogene
• IDs
  MGI:3647445
  NCBI Gene: 629732
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:56230547-56231170 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 28.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647445	pseudogene	Chr10:56230505-56231196 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011090	pseudogene	Chr18:9987232-9988347 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0012928	pseudogene	Chr6:96082715-96083184 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012709	pseudogene	Chr6:99425306-99425761 (-)
WSB/EiJ	MGP_WSBEiJ_G0013172	pseudogene	Chr6:101028138-101028578 (-)

Homology

• Gene Tree
  Rps8-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rps8-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  1

• Ensembl
  ENSMUSG00000071303 (Evidence)
• NCBI Gene
  629732

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071303	Ensembl Gene Model | MGI Sequence Detail	624	C57BL/6J
transcript	ENSMUST00000172445	Ensembl | MGI Sequence Detail	624	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Rps8-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97620	Chr10:56231194-56231196 (-)	-25 bp