Rps8-ps1 Pseudogene Detail

Summary

• Symbol
  Rps8-ps1
• Name
  ribosomal protein S8, pseudogene 1
• Synonyms
  Gm6998

• Feature Type
  pseudogene
• IDs
  MGI:3647445
  NCBI Gene: 629732
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:56230547-56231170 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 28.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647445	pseudogene	Chr10:56230505-56231196 (-)
129S1/SvImJ	ENSMUSG00200029457	pseudogene	Chr10:53143354-53143977 (-)
A/J	ENSMUSG00195028723	pseudogene	Chr10:53397163-53397786 (-)
AKR/J	ENSMUSG00220043244	pseudogene	Chr10:53108971-53109594 (-)
BALB/cJ	ENSMUSG00180029342	pseudogene	Chr10:53526603-53527226 (-)
C3H/HeJ	ENSMUSG00175027013	pseudogene	Chr10:53362972-53363595 (-)
C57BL/6NJ	ENSMUSG00215032489	pseudogene	Chr10:53049085-53049708 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210038858	pseudogene	Chr10:53175072-53175695 (-)
DBA/2J	ENSMUSG00185043660	pseudogene	Chr10:53326994-53327617 (-)
FVB/NJ	ENSMUSG00205037640	pseudogene	Chr10:53238471-53239094 (-)
JF1/MsJ	ENSUMUG00000023700	pseudogene	Chr10:52946440-52947057 (-)
LP/J	ENSMUSG00230023679	pseudogene	Chr10:55128211-55128834 (-)
NOD/ShiLtJ	ENSMUSG00190040324	pseudogene	Chr10:53508705-53509328 (-)
NZO/HlLtJ	ENSMUSG00225022684	pseudogene	Chr10:59409793-59410416 (-)
PWK/PhJ	ENSLUMG00010024493	pseudogene	Chr10:53163304-53163927 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005043424	pseudogene	Chr10:53151983-53152600 (-)

Homology

• Gene Tree
  Rps8-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rps8-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000071303 (Evidence)
• NCBI Gene
  629732

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071303	Ensembl Gene Model | MGI Sequence Detail	624	C57BL/6J
transcript	ENSMUST00000172445	Ensembl | MGI Sequence Detail	624	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Rps8-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97620	Chr10:56231194-56231196 (-)	-25 bp