Gm6999 Gene Detail

Summary

• Symbol
  Gm6999
• Name
  predicted gene 6999

• Feature Type
  lncRNA gene
• IDs
  MGI:3647443
  NCBI Gene: 328448
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:80128412-80221576 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 42.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1743 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647443	lncRNA gene	Chr14:80074152-80243766 (+)
129S1/SvImJ	ENSMUSG00200010504	lncRNA gene	Chr14:68517963-68687592 (+)
A/J	ENSMUSG00195004152	lncRNA gene	Chr14:68646711-68816384 (+)
AKR/J	ENSMUSG00220007366	lncRNA gene	Chr14:68023734-68188364 (+)
BALB/cJ	ENSMUSG00180024238	lncRNA gene	Chr14:68238362-68408021 (+)
C3H/HeJ	ENSMUSG00175029802	lncRNA gene	Chr14:70048330-70217964 (+)
C57BL/6NJ	ENSMUSG00215022304	lncRNA gene	Chr14:68241088-68410727 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005061	lincRNA gene	Chr14:70633042-70752283 (+)
CAST/EiJ	ENSTCUG00005031783	lncRNA gene	Chr14:69894673-70058884 (+)
CBA/J	ENSMUSG00210010217	lncRNA gene	Chr14:68659845-68824418 (+)
DBA/2J	ENSMUSG00185009400	lncRNA gene	Chr14:73820412-73992411 (+)
FVB/NJ	ENSMUSG00205025273	lncRNA gene	Chr14:68069580-68239879 (+)
JF1/MsJ	ENSUMUG00000018935	lncRNA gene	Chr14:84973496-85132192 (+)
LP/J	ENSMUSG00230002798	lncRNA gene	Chr14:85855020-86024648 (+)
NOD/ShiLtJ	ENSMUSG00190010835	lncRNA gene	Chr14:68489668-68654293 (+)
NZO/HlLtJ	ENSMUSG00225025281	lncRNA gene	Chr14:76128297-76292975 (+)
PWK/PhJ	ENSLUMG00010011021	lncRNA gene	Chr14:67835454-68005078 (+)
SPRET/EiJ	ENSMSPG00010000212	lncRNA gene	Chr14:71494311-71651547 (+)
WSB/EiJ	ENSIUOG00005023728	lncRNA gene	Chr14:67833290-67997908 (+)

Homology

• Gene Tree
  Gm6999
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6999
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  19
• UniProt
  1

• Ensembl
  ENSMUSG00000097927 (Evidence)
• NCBI Gene
  328448

Representative Sequences			Length	Strain/Species
genomic	328448	NCBI Gene Model | MGI Sequence Detail	93165	C57BL/6J
transcript	AK053660	GenBank | ENA | DDBJ | MGI Sequence Detail	3447	C57BL/6J
polypeptide	Q3UXB5	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm6999:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126829	Chr14:80128532-80128543 (+)	126 bp
Tssr126830	Chr14:80135881-80135888 (+)	7,473 bp