Gm5224 Pseudogene Detail

Summary

• Symbol
  Gm5224
• Name
  predicted pseudogene 5224

• Feature Type
  pseudogene
• IDs
  MGI:3647439
  NCBI Gene: 383218
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:22953936-22954353 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647439	pseudogene	Chr17:22953809-22956079 (+)
129S1/SvImJ	ENSMUSG00200038745	pseudogene	Chr17:18500324-18500741 (+)
A/J	ENSMUSG00195038256	pseudogene	Chr17:19511011-19511428 (+)
AKR/J	ENSMUSG00220026578	pseudogene	Chr17:18518809-18519226 (+)
BALB/cJ	ENSMUSG00180017977	pseudogene	Chr17:18801119-18801536 (+)
C3H/HeJ	ENSMUSG00175042015	pseudogene	Chr17:18459602-18460019 (+)
C57BL/6NJ	ENSMUSG00215043505	pseudogene	Chr17:18446694-18447111 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010969	pseudogene	Chr3:89706100-89709861 (+)
CAST/EiJ	ENSTCUG00005023488	pseudogene	Chr17:19131901-19132318 (+)
CBA/J	ENSMUSG00210040703	pseudogene	Chr17:18226559-18226976 (+)
DBA/2J	ENSMUSG00185054809	pseudogene	Chr17:20607401-20607818 (+)
FVB/NJ	ENSMUSG00205037523	pseudogene	Chr17:18939905-18940322 (+)
JF1/MsJ	ENSUMUG00000037622	pseudogene	Chr17:20044093-20044510 (+)
LP/J	ENSMUSG00230055136	pseudogene	Chr17:22005310-22005727 (+)
NOD/ShiLtJ	ENSMUSG00190038237	pseudogene	Chr17:18436869-18437286 (+)
NZO/HlLtJ	ENSMUSG00225054810	pseudogene	Chr17:23928382-23928799 (+)
PWK/PhJ	ENSLUMG00010020617	pseudogene	Chr17:18030015-18030432 (+)
SPRET/EiJ	ENSMSPG00010040830	pseudogene	Chr17:19409251-19409667 (+)
WSB/EiJ	ENSIUOG00005040446	pseudogene	Chr17:19232717-19233134 (+)

Homology

• Gene Tree
  Gm5224
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm5224
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000098210 (Evidence)
• NCBI Gene
  383218

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098210	Ensembl Gene Model | MGI Sequence Detail	418	C57BL/6J
transcript	ENSMUST00000183060	Ensembl | MGI Sequence Detail	350	Not Applicable

References

• Summaries
  All 21

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964

TSS for Gm5224:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142919	Chr17:22953799-22953831 (+)	-121 bp