Cfhr3 Gene Detail

Summary

• Symbol
  Cfhr3
• Name
  complement factor H-related 3

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3647418
  NCBI Gene: 624286
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:139512032-139588744 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 61.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1777 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647418	protein coding gene	Chr1:139502302-139588773 (-)
129S1/SvImJ	ENSMUSG00200008752	pseudogene	Chr1:137144945-137225595 (-)
A/J	ENSMUSG00195018126	pseudogene	Chr1:136245229-136317106 (-)
AKR/J	ENSMUSG00220003958	pseudogene	Chr1:136102927-136140955 (-)
BALB/cJ	ENSMUSG00180011678	pseudogene	Chr1:136742422-136818557 (-)
C3H/HeJ	ENSMUSG00175007090	pseudogene	Chr1:136460421-136532299 (-)
C57BL/6NJ	ENSMUSG00215022665	pseudogene	Chr1:136444519-136520647 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013578	pseudogene	Chr1:135318146-135393217 (-)
CBA/J	ENSMUSG00210014613	pseudogene	Chr1:136408636-136480493 (-)
DBA/2J	ENSMUSG00185034715	pseudogene	Chr1:140760949-140825362 (-)
FVB/NJ	ENSMUSG00205002752	pseudogene	Chr1:135767535-135839411 (-)
JF1/MsJ	ENSUMUG00000053439	pseudogene	Chr1:139791519-139866514 (-)
LP/J	ENSMUSG00230040736	pseudogene	Chr1:140276563-140352687 (-)
NOD/ShiLtJ	ENSMUSG00190002976	pseudogene	Chr1:136377235-136439497 (-)
NZO/HlLtJ	ENSMUSG00225000134	pseudogene	Chr1:144051123-144127252 (-)
PWK/PhJ	ENSLUMG00010002157	pseudogene	Chr1:135453157-135637003 (-)
SPRET/EiJ	ENSMSPG00010012508	pseudogene	Chr1:138361150-138416281 (-)
WSB/EiJ	ENSIUOG00005029111	pseudogene	Chr1:136184513-136214203 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Cfhr3
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  11 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  59
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000090623 (Evidence), ENSMUSG00000135477 (Evidence)
• NCBI Gene
  624286

Representative Sequences			Length	Strain/Species
genomic	624286	NCBI Gene Model | MGI Sequence Detail	76713	C57BL/6J
transcript	NM_001374101	RefSeq | MGI Sequence Detail	1751	C57BL/6
polypeptide	NP_001361030	RefSeq | MGI Sequence Detail	386	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR051503 Complement System Regulators and Virion Entry Mediators
  IPR000436 Sushi/SCR/CCP domain
  IPR035976 Sushi/SCR/CCP superfamily

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Cfhr3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr236	Chr1:139588710-139588744 (-)	17 bp
Tssr14067	Chr1:139588656-139588683 (-)	74 bp
Tssr14066	Chr1:139559688-139559698 (-)	29,051 bp