Gm6616 Pseudogene Detail

Summary

• Symbol
  Gm6616
• Name
  predicted gene 6616

• Feature Type
  pseudogene
• IDs
  MGI:3647406
  NCBI Gene: 625730
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:47806983-47807231 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 24.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647406	pseudogene	Chr14:47806866-47807293 (+)
129S1/SvImJ	ENSMUSG00200016831	pseudogene	Chr14:36629151-36629399 (+)
A/J	ENSMUSG00195024886	pseudogene	Chr14:36834809-36835057 (+)
AKR/J	ENSMUSG00220043600	pseudogene	Chr14:36209756-36210004 (+)
BALB/cJ	ENSMUSG00180047591	pseudogene	Chr14:36443651-36443899 (+)
C3H/HeJ	ENSMUSG00175032490	pseudogene	Chr14:38124081-38124329 (+)
C57BL/6NJ	ENSMUSG00215037570	pseudogene	Chr14:36827605-36827853 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010765	pseudogene	Chr14:38618652-38618900 (+)
CBA/J	ENSMUSG00210046452	pseudogene	Chr14:36769317-36769565 (+)
DBA/2J	ENSMUSG00185054186	pseudogene	Chr14:41559733-41559981 (+)
FVB/NJ	ENSMUSG00205047603	pseudogene	Chr14:35986882-35987130 (+)
JF1/MsJ	ENSUMUG00000048880	pseudogene	Chr14:53603380-53603628 (+)
LP/J	ENSMUSG00230053462	pseudogene	Chr14:53812296-53812544 (+)
NOD/ShiLtJ	ENSMUSG00190046785	pseudogene	Chr14:36460873-36461121 (+)
NZO/HlLtJ	ENSMUSG00225052473	pseudogene	Chr14:44067102-44067350 (+)
PWK/PhJ	ENSLUMG00010040015	pseudogene	Chr14:36060844-36061092 (+)
SPRET/EiJ	ENSMSPG00010003259	pseudogene	Chr14:39395885-39396133 (+)
WSB/EiJ	ENSIUOG00005039392	pseudogene	Chr14:36341842-36342090 (+)

Homology

• Gene Tree
  Gm6616
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm6616
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000115571 (Evidence)
• NCBI Gene
  625730

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115571	Ensembl Gene Model | MGI Sequence Detail	249	C57BL/6J
transcript	ENSMUST00000228790	Ensembl | MGI Sequence Detail	249	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm6616:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125319	Chr14:47806863-47806867 (+)	-118 bp