Gm7993 Pseudogene Detail

Summary

• Symbol
  Gm7993
• Name
  predicted gene 7993

• Feature Type
  pseudogene
• IDs
  MGI:3647399
  NCBI Gene: 666231
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:96122099-96123482 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647399	pseudogene	Chr5:96121901-96123682 (+)
129S1/SvImJ	ENSMUSG00200009437	pseudogene	Chr5:89798467-89799846 (+)
A/J	ENSMUSG00195026799	pseudogene	Chr5:89373893-89375277 (+)
AKR/J	ENSMUSG00220012568	pseudogene	Chr5:88837260-88838642 (+)
BALB/cJ	ENSMUSG00180028112	pseudogene	Chr5:89542884-89544266 (+)
C3H/HeJ	ENSMUSG00175046279	pseudogene	Chr5:91645971-91647353 (+)
C57BL/6NJ	ENSMUSG00215035749	pseudogene	Chr5:89503330-89504714 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038222	pseudogene	Chr12:65141606-65142988 (+)
CAST/EiJ	ENSTCUG00005038974	pseudogene	Chr5:88928353-88929732 (+)
CBA/J	ENSMUSG00210006404	pseudogene	Chr5:90417671-90419052 (+)
DBA/2J	ENSMUSG00185037009	pseudogene	Chr5:93333714-93335095 (+)
FVB/NJ	ENSMUSG00205031598	pseudogene	Chr5:89336892-89338274 (+)
JF1/MsJ	ENSUMUG00000045706	pseudogene	Chr5:96332303-96333682 (+)
LP/J	ENSMUSG00230029021	pseudogene	Chr5:97379352-97380731 (+)
NOD/ShiLtJ	ENSMUSG00190039603	pseudogene	Chr5:89309330-89310711 (+)
NZO/HlLtJ	ENSMUSG00225013516	pseudogene	Chr5:105123650-105125033 (+)
PWK/PhJ	ENSLUMG00010036940	pseudogene	Chr11:43627219-43628601 (+)
PWK/PhJ	ENSLUMG00010031546	pseudogene	Chr5:88466723-88468099 (+)
SPRET/EiJ	ENSMSPG00010025194	pseudogene	Chr5:91316628-91318448 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm7993
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm7993
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000107092 (Evidence)
• NCBI Gene
  666231

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107092	Ensembl Gene Model | MGI Sequence Detail	1384	C57BL/6J
transcript	ENSMUST00000200970	Ensembl | MGI Sequence Detail	1384	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm7993:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47391	Chr5:96121779-96121783 (+)	-318 bp