Gm5823 Pseudogene Detail

Summary

• Symbol
  Gm5823
• Name
  predicted gene 5823

• Feature Type
  pseudogene
• IDs
  MGI:3647390
  NCBI Gene: 545267
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:80002221-80002754 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 53.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647390	pseudogene	Chr18:80002206-80002922 (+)
129S1/SvImJ	ENSMUSG00200029051	pseudogene	Chr18:77215137-77215670 (+)
A/J	ENSMUSG00195005111	pseudogene	Chr18:77299826-77300359 (+)
AKR/J	ENSMUSG00220018011	pseudogene	Chr18:77241400-77241933 (+)
BALB/cJ	ENSMUSG00180013434	pseudogene	Chr18:77870089-77870622 (+)
C3H/HeJ	ENSMUSG00175013503	pseudogene	Chr18:77419226-77419759 (+)
C57BL/6NJ	ENSMUSG00215026747	pseudogene	Chr18:76781441-76781974 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035371	pseudogene	Chr7:80720166-80720708 (+)
CAST/EiJ	ENSTCUG00005028640	pseudogene	Chr18:76323157-76323690 (+)
CBA/J	ENSMUSG00210037348	pseudogene	Chr18:77369829-77370362 (+)
DBA/2J	ENSMUSG00185011660	pseudogene	Chr18:77275064-77275597 (+)
FVB/NJ	ENSMUSG00205017349	pseudogene	Chr18:76696738-76697271 (+)
JF1/MsJ	ENSUMUG00000037848	pseudogene	Chr18:77172628-77173159 (+)
LP/J	ENSMUSG00230013475	pseudogene	Chr18:79321475-79322008 (+)
NOD/ShiLtJ	ENSMUSG00190023912	pseudogene	Chr18:77072212-77072745 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010006927	pseudogene	Chr18:77582161-77582692 (+)
SPRET/EiJ	ENSMSPG00010010149	pseudogene	Chr18:77921275-77921806 (+)
WSB/EiJ	ENSIUOG00005007854	pseudogene	Chr18:76751457-76751990 (+)

Homology

• Gene Tree
  Gm5823
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm5823
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117813 (Evidence)
• NCBI Gene
  545267

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117813	Ensembl Gene Model | MGI Sequence Detail	534	C57BL/6J
transcript	ENSMUST00000237811	Ensembl | MGI Sequence Detail	534	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Gm5823:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152087	Chr18:80002158-80002170 (+)	-57 bp