Gm5404 Pseudogene Detail

Summary

• Symbol
  Gm5404
• Name
  predicted gene 5404

• Feature Type
  pseudogene
• IDs
  MGI:3647383
  NCBI Gene: 385748
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:15036708-15039372 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 10.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  205 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647383	pseudogene	Chr16:15036685-15039419 (+)
129S1/SvImJ	ENSMUSG00200048655	pseudogene	Chr16:12019547-12022211 (+)
A/J	ENSMUSG00195035023	pseudogene	Chr16:11587666-11590330 (+)
AKR/J	ENSMUSG00220046893	pseudogene	Chr16:11884062-11886726 (+)
BALB/cJ	ENSMUSG00180039852	pseudogene	Chr16:11818029-11820693 (+)
C3H/HeJ	ENSMUSG00175051265	pseudogene	Chr16:11973951-11976615 (+)
C57BL/6NJ	ENSMUSG00215042849	pseudogene	Chr16:11701758-11704422 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046308	pseudogene	Chr16:11884110-11886774 (+)
CBA/J	ENSMUSG00210048594	pseudogene	Chr16:11990916-11993580 (+)
DBA/2J	ENSMUSG00185035046	pseudogene	Chr16:11936395-11939059 (+)
FVB/NJ	ENSMUSG00205046354	pseudogene	Chr16:11940288-11942952 (+)
JF1/MsJ	ENSUMUG00000054578	pseudogene	Chr16:12028571-12031235 (+)
LP/J	ENSMUSG00230045599	pseudogene	Chr16:14514920-14517584 (+)
NOD/ShiLtJ	ENSMUSG00190049035	pseudogene	Chr16:12076428-12079092 (+)
NZO/HlLtJ	ENSMUSG00225032171	pseudogene	Chr16:17760183-17762847 (+)
PWK/PhJ	ENSLUMG00010050629	pseudogene	Chr16:11914014-11916678 (+)
SPRET/EiJ	ENSMSPG00010046479	pseudogene	Chr16:11900804-11903471 (+)
WSB/EiJ	ENSIUOG00005044239	pseudogene	Chr16:12026648-12029312 (+)

Homology

• Gene Tree
  Gm5404
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116213 (Evidence)
• NCBI Gene
  385748

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116213	Ensembl Gene Model | MGI Sequence Detail	2665	C57BL/6J
transcript	ENSMUST00000228992	Ensembl | MGI Sequence Detail	1826	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;