Gm5830 Pseudogene Detail

Summary

• Symbol
  Gm5830
• Name
  predicted pseudogene 5830

• Feature Type
  pseudogene
• IDs
  MGI:3647375
  NCBI Gene: 545332
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:78945354-78945796 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 40.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647375	pseudogene	Chr1:78944098-78945814 (-)
129S1/SvImJ	ENSMUSG00200035445	pseudogene	Chr1:76624277-76624719 (-)
A/J	ENSMUSG00195010980	pseudogene	Chr1:76031319-76031761 (-)
AKR/J	ENSMUSG00220010482	pseudogene	Chr1:76199334-76199776 (-)
BALB/cJ	ENSMUSG00180021974	pseudogene	Chr1:76293883-76294325 (-)
C3H/HeJ	ENSMUSG00175018713	pseudogene	Chr1:76436156-76436598 (-)
C57BL/6NJ	ENSMUSG00215029651	pseudogene	Chr1:76347239-76347681 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028885	pseudogene	Chr1:76053340-76053783 (-)
CBA/J	ENSMUSG00210043865	pseudogene	Chr1:76168546-76168988 (-)
DBA/2J	ENSMUSG00185032484	pseudogene	Chr1:77220476-77220918 (-)
FVB/NJ	ENSMUSG00205038164	pseudogene	Chr1:75768629-75769071 (-)
JF1/MsJ	ENSUMUG00000025384	pseudogene	Chr13:85510839-85511282 (+)
JF1/MsJ	ENSUMUG00000006649	pseudogene	Chr1:76089370-76089808 (-)
LP/J	ENSMUSG00230014815	pseudogene	Chr1:77199596-77200038 (-)
NOD/ShiLtJ	ENSMUSG00190037779	pseudogene	Chr1:76368261-76368703 (-)
NZO/HlLtJ	ENSMUSG00225040996	pseudogene	Chr1:80435050-80435492 (-)
PWK/PhJ	ENSLUMG00010014066	pseudogene	Chr1:75690849-75691287 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005014400	pseudogene	Chr1:75961228-75961670 (-)

Homology

• Gene Tree
  Gm5830
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5830
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000072978 (Evidence)
• NCBI Gene
  545332

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072978	Ensembl Gene Model | MGI Sequence Detail	443	C57BL/6J
transcript	ENSMUST00000049117	Ensembl | MGI Sequence Detail	443	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm5830:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12431	Chr1:78945801-78945817 (-)	-13 bp