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Pate9 Gene Detail
Summary
  • Symbol
    Pate9
  • Name
    prostate and testis expressed 9
  • Synonyms
    Gm5615
  • Feature Type
    protein coding gene
  • IDs
    MGI:3647347
    NCBI Gene: 434396
  • Alliance
    genome feature page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:36443699-36453259 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 20.65 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    289 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647347
 protein coding gene Chr9:36443693-36453259 (-)
129S1/SvImJ ENSMUSG00200039769
 protein coding gene Chr9:33421257-33430826 (-)
A/J ENSMUSG00195048929
 protein coding gene Chr9:33212621-33222194 (-)
AKR/J ENSMUSG00220042704
 protein coding gene Chr9:33288462-33301053 (-)
BALB/cJ ENSMUSG00180044872
 protein coding gene Chr9:33340952-33350523 (-)
C3H/HeJ ENSMUSG00175046008
 protein coding gene Chr9:33342053-33351635 (-)
C57BL/6NJ ENSMUSG00215032534
 protein coding gene Chr9:33343379-33352947 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031969
 protein coding gene Chr9:31901043-31903672 (-)
CAST/EiJ ENSTCUG00005044327
 protein coding gene Chr9:33314189-33323708 (-)
CBA/J ENSMUSG00210039189
 protein coding gene Chr9:33346367-33355865 (-)
DBA/2J ENSMUSG00185037176
 protein coding gene Chr9:33437888-33450484 (-)
FVB/NJ ENSMUSG00205029992
 protein coding gene Chr9:33708396-33717953 (-)
JF1/MsJ ENSUMUG00000044565
 protein coding gene Chr9:33570530-33580048 (-)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190021236
 protein coding gene Chr9:33469983-33482577 (-)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010042274
 protein coding gene Chr9:33481733-33491245 (-)
SPRET/EiJ ENSMSPG00010026411
 protein coding gene Chr9:34069231-34078902 (-)
WSB/EiJ ENSIUOG00005039736
 protein coding gene Chr9:32958241-32968224 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 434396 NCBI Gene Model | MGI Sequence Detail 9561 C57BL/6J ±  kb
transcript NM_001033783 RefSeq | MGI Sequence Detail 2342 C57BL/6  
polypeptide NP_001028955 RefSeq | MGI Sequence Detail 101 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR016054 Ly-6 antigen/uPA receptor-like
    IPR051110 Ly-6/neurotoxin-like and GPI-anchored
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:6278527
References
more
  • Summaries
    All 16
    Phenotypes 4
  • Earliest
    J:138601 Levitin F, et al., PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR proteins that are expressed in reproductive and neuron-rich tissues and possess neuromodulatory activity. J Biol Chem. 2008 Jun 13;283(24):16928-39
  • Latest
    J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory