Gm8546 Pseudogene Detail

Summary

• Symbol
  Gm8546
• Name
  predicted gene 8546

• Feature Type
  pseudogene
• IDs
  MGI:3647346
  NCBI Gene: 100534278
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:89725275-89726538 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647346	pseudogene	Chr13:89725078-89726582 (-)
129S1/SvImJ	ENSMUSG00200009692	pseudogene	Chr13:84209394-84210656 (-)
A/J	ENSMUSG00195024377	pseudogene	Chr13:84711522-84712784 (-)
AKR/J	ENSMUSG00220014227	pseudogene	Chr13:83219259-83220521 (-)
BALB/cJ	ENSMUSG00180016831	pseudogene	Chr13:85228305-85229567 (-)
C3H/HeJ	ENSMUSG00175023327	pseudogene	Chr13:85430223-85431485 (-)
C57BL/6NJ	ENSMUSG00215003091	pseudogene	Chr13:85315378-85316641 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210024735	pseudogene	Chr13:84704903-84706165 (-)
DBA/2J	ENSMUSG00185010227	pseudogene	Chr13:88396812-88398074 (-)
FVB/NJ	ENSMUSG00205009078	pseudogene	Chr13:84155432-84156694 (-)
JF1/MsJ	ENSUMUG00000024724	pseudogene	Chr13:88094704-88095922 (-)
LP/J	ENSMUSG00230004444	pseudogene	Chr13:98426961-98428223 (-)
NOD/ShiLtJ	ENSMUSG00190018872	pseudogene	Chr13:85074607-85075869 (-)
NZO/HlLtJ	ENSMUSG00225030664	pseudogene	Chr13:90944314-90945576 (-)
PWK/PhJ	ENSLUMG00010011981	pseudogene	Chr13:84200346-84201564 (-)
SPRET/EiJ	ENSMSPG00010006973	pseudogene	Chr13:85394676-85394935 (-)
WSB/EiJ	ENSIUOG00005031563	pseudogene	Chr13:84101330-84102592 (-)

Homology

• Gene Tree
  Gm8546
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8546
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000094463 (Evidence)
• NCBI Gene
  100534278

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094463	Ensembl Gene Model | MGI Sequence Detail	1264	C57BL/6J
transcript	ENSMUST00000178288	Ensembl | MGI Sequence Detail	1264	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm8546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123377	Chr13:89726560-89726582 (-)	-33 bp