Gm5809 Pseudogene Detail

Summary

• Symbol
  Gm5809
• Name
  predicted pseudogene 5809

• Feature Type
  pseudogene
• IDs
  MGI:3647324
  NCBI Gene: 545152
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:22049141-22049668 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 13.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647324	pseudogene	Chr16:22049141-22049669 (+)
129S1/SvImJ	ENSMUSG00200047503	pseudogene	Chr16:19048738-19049266 (+)
A/J	ENSMUSG00195036473	pseudogene	Chr16:18607079-18607607 (+)
AKR/J	ENSMUSG00220046413	pseudogene	Chr16:18926485-18927013 (+)
BALB/cJ	ENSMUSG00180041137	pseudogene	Chr16:18847671-18848199 (+)
C3H/HeJ	ENSMUSG00175050689	pseudogene	Chr16:18992613-18993141 (+)
C57BL/6NJ	ENSMUSG00215043232	pseudogene	Chr16:18719825-18720353 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009650	pseudogene	Chr11:73483708-73491953 (-)
CAST/EiJ	ENSTCUG00005046525	pseudogene	Chr16:19324366-19324891 (+)
CBA/J	ENSMUSG00210048655	pseudogene	Chr16:19014369-19014897 (+)
DBA/2J	ENSMUSG00185033765	pseudogene	Chr16:18953114-18953642 (+)
FVB/NJ	ENSMUSG00205048857	pseudogene	Chr16:18948979-18949507 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230033912	pseudogene	Chr16:21532266-21532794 (+)
NOD/ShiLtJ	ENSMUSG00190049581	pseudogene	Chr16:19094597-19095125 (+)
NZO/HlLtJ	ENSMUSG00225039147	pseudogene	Chr16:24783366-24783894 (+)
PWK/PhJ	ENSLUMG00010050077	pseudogene	Chr16:19000556-19001079 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005045283	pseudogene	Chr16:19173272-19173800 (+)

Homology

• Gene Tree
  Gm5809
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000043870 (Evidence)
• NCBI Gene
  545152

Representative Sequences			Length	Strain/Species
genomic	545152	NCBI Gene Model | MGI Sequence Detail	528	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5809:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137540	Chr16:22049084-22049134 (+)	-32 bp